RNA id: TU37508


Basic Information

Item Value
RNA id TU37508
length 420
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G27962
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53674588 ~ 53675007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttttataaaaataaaaaaattaacttaacataaatatttttttataaaaaataaaatatggtctttcttgattttactaaacataaatacttgtttttataaaaaaatatataaaataaagaaagtctttcttgacctgacatatttaacactgtaaaactgaacattgaacctgttgttctctgcagggcagcaaggagtggttttataaaacagaaccgtgtatatggtctagaccagggatcacatatatgcggactgcggtccgggtccggacccagacgttgtccaatacggacccataccggacccaactactgagaaggatttaattctgacagtgttcatttaaagcaccggaacttttcttgtctttacggtatgtgcgctctgcgccacagtgaacttccaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37481 lncRNA upstream 60581 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 97390 53576776 ~ 53577198 (+) True G27923
TU37463 lncRNA upstream 139363 53534600 ~ 53535225 (+) True G27917
TU37446 lncRNA upstream 170164 53499475 ~ 53504424 (+) True G27903
TU37398 lncRNA upstream 343811 53327872 ~ 53330777 (+) True G27875
TU37511 lncRNA downstream 12692 53687699 ~ 53689734 (+) True G27964
TU37513 lncRNA downstream 16719 53691726 ~ 53693741 (+) True G27966
TU37523 lncRNA downstream 20943 53695950 ~ 53696768 (+) True G27972
TU37538 lncRNA downstream 38758 53713765 ~ 53715952 (+) True G27984
TU37544 lncRNA downstream 41467 53716474 ~ 53721884 (+) True G27986
XM_022662592.1 mRNA upstream 845304 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 845304 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 845304 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 845304 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 858094 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 288555 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 288555 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 288555 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 288555 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 288555 53963562 ~ 54049416 (+) False epb41l2
trnas-aga_8 other upstream 20858 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 21650 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 21999 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 22371 53652135 ~ 53652217 (+) True trnal-cag_6
trnas-uga_9 other upstream 22560 53651947 ~ 53652028 (+) True trnas-uga_9
TU37650 other downstream 703234 54378241 ~ 54379306 (+) True G28072
TU38445 other downstream 2557732 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 2615749 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 2662173 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 3726918 57401925 ~ 57402392 (+) True G28865

Expression Profile