RNA id: TU37523


Basic Information

Item Value
RNA id TU37523
length 511
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G27972
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53695950 ~ 53696768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGAGCAGCAGCCTCAGTCACTTTTCATTCAGAGAACTCAAAATCTGCCCTTTTGAGACAATattcagaaaatattttttattaattgcagTGGTGGAGCTCCGACCTCTTGAGCACAACGTTTAGCAGTGCGTTTCCCACATCTTTCCCCGGCACAGCAAGAGCCATCAGCTCAACGCAGGTCACGTGAAGCGCGTGTGCCGCTGGGTTCGGAAACTCATTAAAGCGCCAGTCACAGTTGGGGAAAGGACCTGGAGACTTTCCAGCCATCGTGTCAACCAGGCGGCCGATGAGTTTGCAGTAGTAGGTGTCGTCTGGGATCCAGACATTGTCGTCCCGGGGGTTCATTCCAAACTTGAGGTAGGTCTCGCTGAGGCACCAGCCAGGTGTGCGGTTGTCCTTCAGTGAGCTCATGATGGCGTGTACCAGCTTGCGCTTCAGATTGGTGCGGTCACGCAGGTGCCTCTCATAGTAGTGCAGGGTGTTATAGAGGTACGTCACCGGCcgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37513 lncRNA upstream 2209 53691726 ~ 53693741 (+) True G27966
TU37511 lncRNA upstream 6216 53687699 ~ 53689734 (+) True G27964
TU37508 lncRNA upstream 20943 53674588 ~ 53675007 (+) True G27962
TU37481 lncRNA upstream 81943 53613777 ~ 53614007 (+) True G27935
TU37469 lncRNA upstream 118752 53576776 ~ 53577198 (+) True G27923
TU37538 lncRNA downstream 16997 53713765 ~ 53715952 (+) True G27984
TU37544 lncRNA downstream 19706 53716474 ~ 53721884 (+) True G27986
TU37545 lncRNA downstream 19706 53716474 ~ 53721884 (+) False G27986
TU37549 lncRNA downstream 27452 53724220 ~ 53724470 (+) True G27989
XR_002649730.1 lncRNA downstream 31390 53728158 ~ 53731983 (+) True LOC111191926
XM_022662592.1 mRNA upstream 866666 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 866666 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 866666 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 866666 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 879456 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 266794 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 266794 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 266794 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 266794 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 266794 53963562 ~ 54049416 (+) False epb41l2
trnas-aga_8 other upstream 42220 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 43012 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 43361 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 43733 53652135 ~ 53652217 (+) True trnal-cag_6
trnas-uga_9 other upstream 43922 53651947 ~ 53652028 (+) True trnas-uga_9
TU37650 other downstream 681473 54378241 ~ 54379306 (+) True G28072
TU38445 other downstream 2535971 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 2593988 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 2640412 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 3705157 57401925 ~ 57402392 (+) True G28865

Expression Profile