RNA id: TU37560


Basic Information

Item Value
RNA id TU37560
length 1385
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G27996
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53742964 ~ 53867648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacattctAGAGTGTATAAGTTGCTGGTATCGGAGAATGAGTGTATAGCTTTTGATATTGTTCCTAAGTGTTTCATTTACTGTATGACAGCCTTTATAAAGTCATTTAAGACCTACATAAGCCTACATTCATAACAACGGGTACTGGGTACAGTCCTACATCAAACACTCAAAGGCTTATTCTAACAAGTTTCAGATGTCAAAGCATGTTTAGAAGGGGGAAATGACATCACATGACAAAAGCACCCTATTTATAATTAAAGACATTGTTTGGAACCAGTTGTTATGAAGAAAGGCTTATGTAGGTGTTATATAGCCTGTGATATAAACACTCTCACTCATTCTTAGGCTGGTTAGACTTATATGTAAGAGTTTGGTTTACTGTGTGTTCGTGTGCTCTTAAGTTAGTTAGTTGtctatacagtgtgtgtatatctgtgaaAGTGCtgggtgtaaatgtgtgtgtcgATGAAGGTTTTGTCTGGTCACTATtatgagagaaagtgtgtgtgtgtttgtttgtgtgtgtgtgcacgcgttAATGAAACACTGTAGagtgtttaatttaatgtcTACAGTTTGTTGGTGTGTATATAACTCAGCAGTTCTCAAAAGGGTCCTAAAGGACCCCAGATGGTCCAAATTGTTttccaactcaactcaacataaatatagaaaatatggaACGTCTGGGGGTCCCTGAGGGCGTTTTTACACCTGAAGTTCGTTTCTAGGGTCCAGATCATTttcttggagcgttttctcactctgtttggtttggtttggtttcacacaggaataaacctaaacacaccaaaatgcgcaccaataaaccataaACTCGTGTGATTGGTCAGAGGTGTCTGGCGTGGgggcaagaaagtaaatatagcgagcaGATTCCGTGTTCCagcgtgtatatctgtgcagtgtgaagctgctttaacacagaacactgaaacgctgcacttttAAGCAGTCTTTTTAATTATATGTGCAGCGCAAATGCACATATTAAACGAGTAGTAAACGAAGTCGCACAGCTGCGagtagtgaacgcagcacactcagcgtgtgtaaacagcatggagcagcagagacagtgtttgttcatagctgtggtaataagCGTTATCTGCCTAACATATGAGATAAAACTGATATTAAAATCAGTTTAGTTCAAAttaaaggagtatatttgatagctgggtcggatcgaaaGCACAAGTGAACCAGTCCAGAGTTCTTTTTAGACTGGACTGAAACCACCTCCACTAGGTGGACCGCACTAAaggtacaaacaaaccagagtctgttcaaccagaccaaatagtgtcggtgtgaaaacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649730.1 lncRNA upstream 94347 53728158 ~ 53731983 (+) True LOC111191926
TU37549 lncRNA upstream 101860 53724220 ~ 53724470 (+) True G27989
TU37544 lncRNA upstream 104446 53716474 ~ 53721884 (+) True G27986
TU37545 lncRNA upstream 104446 53716474 ~ 53721884 (+) False G27986
TU37538 lncRNA upstream 110378 53713765 ~ 53715952 (+) True G27984
TU37593 lncRNA downstream 79587 53917793 ~ 53937355 (+) True G28022
TU37625 lncRNA downstream 192099 54030305 ~ 54031914 (+) True G28049
TU37626 lncRNA downstream 207894 54046100 ~ 54047682 (+) True G28050
TU37646 lncRNA downstream 445845 54284051 ~ 54301420 (+) True G28068
TU37644 lncRNA downstream 563674 54401880 ~ 54403855 (+) True G28066
XM_022662592.1 mRNA upstream 997046 52825184 ~ 52829284 (+) False LOC103041583
XM_022662601.1 mRNA upstream 997046 52825184 ~ 52829284 (+) False LOC103041583
XM_022662581.1 mRNA upstream 997046 52825246 ~ 52829284 (+) True LOC103041583
XM_022662588.1 mRNA upstream 997046 52825246 ~ 52829284 (+) False LOC103041583
XM_022662560.1 mRNA upstream 1009836 52811053 ~ 52816494 (+) True LOC111188773
XM_022662659.1 mRNA downstream 125356 53963562 ~ 54049416 (+) False epb41l2
XM_022662654.1 mRNA downstream 125356 53963562 ~ 54049416 (+) True epb41l2
XM_022662728.1 mRNA downstream 125356 53963562 ~ 54049416 (+) False epb41l2
XM_022662663.1 mRNA downstream 125356 53963562 ~ 54049416 (+) False epb41l2
XM_022662732.1 mRNA downstream 125356 53963562 ~ 54049416 (+) False epb41l2
trnas-aga_8 other upstream 172600 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 173392 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 173741 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 174113 53652135 ~ 53652217 (+) True trnal-cag_6
trnas-uga_9 other upstream 174302 53651947 ~ 53652028 (+) True trnas-uga_9
TU37650 other downstream 540035 54378241 ~ 54379306 (+) True G28072
TU38445 other downstream 2394533 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 2452550 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 2498974 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 3563719 57401925 ~ 57402392 (+) True G28865

Expression Profile