RNA id: TU37653


Basic Information

Item Value
RNA id TU37653
length 958
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id akap7
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53742880 ~ 53907412 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttattcctgtgtgaaaccaaaccaaaccaaacagagtgagaaaacgctccaagaaAATGATCTGGACCCTAGAAACGAACTTCAGGTGTAAAAACGCCCTCAGGGACCCCCAGACGTtccatattttctatatttatgttgagttgagttggaaAACAATTTGGACCATCTGGGGTCCTTTAGGACCCTTTTGAGAACTGCTGAGTTATATACACACCAACAAACTGTAgacattaaattaaacactCTACAGTGTTTCATTaacgcgtgcacacacacacaaacaaacacacacacactttctctcataATAGTGACCAGACAAAACCTTCATcgacacacacatttacacccaGCACTttcacagatatacacacactgtatagaCAACTAACTAACTTAAGAGCACACGAACACACAGTAAACCAAACTCTTACATATAAGTCTAACCAGCCTAAGAATGAGTGAGAGTGTTTATATCACAGGCTATATAACACCTACATAAGCCTTTCTTCATAACAACTGGTTCCAAACAATGTCTTTAATTATAAATAGGGTGCTTTTGTCATGTGATGTCATTTCCCCCTTCTAAACATGCTTTGACATCTGAAACTTGTTAGAATAAGCCTTTGAGTGTTTGATGTAGGACTGTACCCAGTACCCGTTGTTATGAATGTAGGCTTATGTAGGTCTTAAATGACTTTATAAAGGCTGTCATACAGTAAATGAAACACTTAGGAACAATATCAAAAGCTATACACTCATTCTCCGATACCAGCAACTTATACACTCTagaatgtctctcacacacacacacacacacacacacacacacaccaagagAGAAGCCCAAGGATCTGAAGAGACAGACTAAAGATAAGAGAACAGTTTAGATAGTTGGAGCTCAgagctgcatgtttttttttttgcatcgcTGGCAATGATTcataaagaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37506 lncRNA downstream 163058 53662814 ~ 53663152 (-) True G27960
TU37504 lncRNA downstream 164295 53661543 ~ 53661915 (-) True G27958
TU37502 lncRNA downstream 166073 53659876 ~ 53660137 (-) True G27956
TU37493 lncRNA downstream 186153 53639799 ~ 53640057 (-) True G27947
TU37491 lncRNA downstream 203922 53622071 ~ 53622288 (-) True trnal-cag
TU37652 lncRNA upstream 1112 53838771 ~ 53869612 (-) False akap7
TU37658 lncRNA upstream 28396 53866055 ~ 53943260 (-) True G28075
TU37678 lncRNA upstream 40459 53878118 ~ 53881179 (-) True G28093
TU37683 lncRNA upstream 53439 53891098 ~ 54247479 (-) True G28098
TU37696 lncRNA upstream 142810 53980469 ~ 54049399 (-) True G28110
XM_022678355.1 mRNA downstream 110302 53689367 ~ 53715908 (-) True med23
XM_007252949.2 mRNA downstream 416141 53333965 ~ 53410069 (-) False LOC103035653
XM_007252948.3 mRNA downstream 481466 53333965 ~ 53344744 (-) True LOC103035653
XM_022662540.1 mRNA downstream 1060366 52760053 ~ 52765844 (-) True glrx5
XM_022662641.1 mRNA upstream 1301 53838960 ~ 53907401 (-) False akap7
XM_007259689.3 mRNA upstream 1421 53839080 ~ 53907403 (-) False akap7
XM_007259688.3 mRNA upstream 1421 53839080 ~ 53907403 (-) True akap7
XM_022662649.1 mRNA upstream 47437 53885096 ~ 53907412 (-) False akap7
XM_007259686.3 mRNA upstream 325443 54163102 ~ 54190321 (-) True tmem200a
trnal-cag other downstream 203852 53622276 ~ 53622358 (-) False trnal-cag
TU37335 other downstream 976304 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 998257 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 3085776 50725063 ~ 50740434 (-) True pcmt1
XR_002648509.1 other downstream 3286538 50537655 ~ 50539672 (-) False LOC103034285
XR_002648645.1 other upstream 213102 54050761 ~ 54055697 (-) False LOC103040805
TU37835 other upstream 719287 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 1006403 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 1662241 55499900 ~ 55501760 (-) True LOC111189318
TU38134 other upstream 1662241 55499900 ~ 55501760 (-) False LOC111189318

Expression Profile