RNA id: TU37693


Basic Information

Item Value
RNA id TU37693
length 1966
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC103040805
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54049795 ~ 54055697 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGAAGAACGTTCCTGGCTGGTTCCTGTGTGGAGGAGTCTTCCTGCCGGTCACTctcctgcttctgctgctgattCTTCACCTGAACCGTAAACTACAGGAAGtgGAGGTGGAACTGTCTGAGGCTCCAGACCTGCGGGAGGCAGCACAGCAACTGCTCTTCaagcccaaacacacacacagtcacaaacacacccatgttcacagacacacacactggcacAGAGATGCTGAGAAGAAATCCGCCTTCAAGATGAGATGAACTCTATAGCATGGCAGATCAGCAGGACCAGGACTGGAcacctcagagagagagagagtacatgCATTTATATGGAGCATATCTGAACATATTTCAACACCAAGAACTCCTGAAGAGACTCTGAGCACATATGCAGCCAAACACTTGGCTCCCAGGTCTGCAGAGATGCTGGTATTGGTTTACAATAAGCATGGTCAGGACCTGAATACATTAACAGTAATGACCGTTTTGGACCATTTTTATGGATCCATAAATGAAGTTTTGACACATTGTAaagataattattattttcttaagtGATGCATTAAACATAAtgcaattacattacatactctcactgtaaaacacagtatttgCATCCAGAGAGAATCGATTGATAGCAGTGAACcttggtgggtagtcatgcCAGACTGTCACAAATTGACACGTCTTTACTGAAGAGTCTTGGCGTCTCTCGCATCACAcatccagaaggcctggtgtcatggtgtaaGATGCAATTTTGCATGATGCCAGATTAtgtttggtcttcattacagacgCTTTTGAGAGACCAAAATtacattaatgaggtcctgcattCAGTGGTtctcagtgttgggcacgttactttgaaaaagcaattagttatagttactagttactccactataaactaactagttaccagtaaaagtaactattgagTTACTTTTGTTACTCAccccagtaaaaaaaattacgaaagatattaaaattatgtaattactattattattagaaaattaacaaacgaaaataaactcaaaatgttgacaaaaatagaatctgatgaattttaaaaaataaaaacgaaaaaGAGAGTTGAGTGGTGCGGTGGTGGTGGGTGCGCGCAgttcttcAGTTGTCCACCGGGGTGGGTGGGACTTGAGAACACTGTCACACGCACACTTGCTCCTTTGTCTGTATccgcaaagttaaaaaaaaaaaataaataataataaaaaaagttaattgagtggccattatagttacagtcagaataattagttagattacttgttactgaaaaaagtaatagaaaaaagtagtaacattgtttaattccatgccgttactcccatcactggtggtccaaccttttctgaatgcacattCTGGTTAGCTCTTCCAAcagctcatccacatactgctgctatcCCAAGAGCTTgtcttgaagacacagatatgaTACTATACCAATGCCAGGAGCATCTCCAGACCCTCCtctgattaataatgtgtgtgATAAATGTTCATGATGCATGGGATGGACTATTgtaggacaccattaggaacatTTACATCTTCATGCAGAAATGTGTGGCCTGTTGCAATAAACATGTTGCACATGCGACACTTCAGATCCAAAAttacacattacattttttatgtattttgaaAAAGGATTCAGCttcttctacttttttttaaagggacaAAAAGGCCAATTTGTAAAACTGTATAGAAAcaatattttgttatgttgtggCAGCATGGTGAGATTTGGTCATAGTTTGCAAGGTCTGTATTATTATTCAGTTGAATACTGAACCCTCACATGGGGGGATTGACAGTATTGTGAGATCATGCAGGAGGGAAGTTGCATACTTATCTGTCTTTTACTGCTTacgataaatcatattttatcatTTGAGTAAAAAATCTCTCGTTCTTGTGAGCCTG

Function

GO:

id name namespace
GO:0016830 carbon-carbon lyase activity molecular_function
GO:0004611 phosphoenolpyruvate carboxykinase activity molecular_function
GO:0004613 phosphoenolpyruvate carboxykinase (GTP) activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37696 lncRNA downstream 396 53980469 ~ 54049399 (-) True G28110
TU37658 lncRNA downstream 106535 53866055 ~ 53943260 (-) True G28075
TU37678 lncRNA downstream 168616 53878118 ~ 53881179 (-) True G28093
TU37652 lncRNA downstream 180183 53838771 ~ 53869612 (-) False akap7
TU37657 lncRNA downstream 211582 53793218 ~ 53838213 (-) True G28074
TU37721 lncRNA upstream 178456 54234137 ~ 54234756 (-) True G28133
TU37722 lncRNA upstream 178550 54234231 ~ 54238171 (-) True G28134
XR_002648647.1 lncRNA upstream 203230 54258911 ~ 54265628 (-) True LOC103031114
TU37730 lncRNA upstream 280168 54335849 ~ 54365033 (-) True G28140
TU37738 lncRNA upstream 345601 54401282 ~ 54403817 (-) True G28145
XM_022662649.1 mRNA downstream 142383 53885096 ~ 53907412 (-) False akap7
XM_007259689.3 mRNA downstream 142392 53839080 ~ 53907403 (-) False akap7
XM_007259688.3 mRNA downstream 142392 53839080 ~ 53907403 (-) True akap7
XM_022662641.1 mRNA downstream 142394 53838960 ~ 53907401 (-) False akap7
XM_022678355.1 mRNA downstream 333887 53689367 ~ 53715908 (-) True med23
XM_007259686.3 mRNA upstream 107421 54163102 ~ 54190321 (-) True tmem200a
XM_007254895.3 mRNA upstream 412336 54468017 ~ 54524305 (-) False tab2
XM_007254897.3 mRNA upstream 412336 54468017 ~ 54524304 (-) False tab2
XM_007254893.3 mRNA upstream 412336 54468017 ~ 54524304 (-) True tab2
XM_007254896.3 mRNA upstream 412336 54468017 ~ 54524303 (-) False tab2
trnal-cag other downstream 427437 53622276 ~ 53622358 (-) False trnal-cag
TU37335 other downstream 1199889 52786472 ~ 52849906 (-) False G27821
TU37336 other downstream 1221842 52786472 ~ 52827953 (-) True G27821
XR_001518286.2 other downstream 3309361 50725063 ~ 50740434 (-) True pcmt1
XR_002648509.1 other downstream 3510123 50537655 ~ 50539672 (-) False LOC103034285
TU37835 other upstream 501265 54556946 ~ 54623799 (-) False LOC111188920
trnal-cag_7 other upstream 788381 54844062 ~ 54844144 (-) True trnal-cag_7
TU38133 other upstream 1444219 55499900 ~ 55501760 (-) True LOC111189318
TU38134 other upstream 1444219 55499900 ~ 55501760 (-) False LOC111189318
TU38270 other upstream 1547189 55602870 ~ 55606886 (-) True G28501

Expression Profile