RNA id: TU37739


Basic Information

Item Value
RNA id TU37739
length 948
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G28146
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54419383 ~ 54420330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atggaggctccctgaaacactggcatccacccactccaccgtccacaaacctgagtgaccgtgtgcagtgggagaacaacagcaccagcatctcagtttaccacaatttcctctgtccatgaacccctgaatctgcagccttatctaaagggaaaaacattaattaccaaaagctaaactaaacaagtaagttttcagtctagacttaaagattgagactgtgtctgagtcccgaacatattcggggagattattccagagttgaggcgctttataagagaaagctcttcctcctgcagagctcctctgaatcttaggaactactaataaaccagcaccctgagatctaagtaatcgcggtggttcataacaggagatgaggtcttgtaaatactcaggagcgagcccgtgtagggctttatacgttaacaggagaattttatagtctatgcggaatttgactggaagccagtgcagtgctgatagtactggactaatatggtcaaattttctagttttagtaaggaccctggctgcagcattttgaactagctgaagtttatttaagttactgccggaacatccagacagtagcgcattacaataatctagccttgaggtaatgaaggcatgtactaatttttctgcgtcatgcagtgatagggcatttcttatcttggcaatattacggaggtgtagaaaagctgttctagtaacattagatatgtgtttatcgaatgctagatctgaatctatgataactccaaggtttttagctgctgaaccaggggtggctgagaagtcggccagatttagcattaagtctgataatttatttctagcagctttggggcctaataggagaacttctgttttatcactatttaataggaggaagttgtgcgacatccatgattttacatcttctacacaatcctcgattttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37644 lncRNA upstream 15528 54401880 ~ 54403855 (+) True G28066
TU37646 lncRNA upstream 117963 54284051 ~ 54301420 (+) True G28068
TU37626 lncRNA upstream 371701 54046100 ~ 54047682 (+) True G28050
TU37625 lncRNA upstream 387469 54030305 ~ 54031914 (+) True G28049
TU37593 lncRNA upstream 482028 53917793 ~ 53937355 (+) True G28022
TU37763 lncRNA downstream 103685 54524015 ~ 54524290 (+) True G28164
TU37796 lncRNA downstream 109463 54529793 ~ 54533491 (+) True G28193
TU37797 lncRNA downstream 114599 54534929 ~ 54537760 (+) True G28194
TU37799 lncRNA downstream 117438 54537768 ~ 54538463 (+) True G28196
TU37801 lncRNA downstream 175144 54595474 ~ 54643428 (+) False G28197
XM_022662778.1 mRNA upstream 19492 54267384 ~ 54399891 (+) True scara5
XM_022662750.1 mRNA upstream 369967 53963562 ~ 54049416 (+) False epb41l2
XM_022662784.1 mRNA downstream 13393 54433723 ~ 54455524 (+) True LOC103031746
XM_022662787.1 mRNA downstream 13393 54433723 ~ 54455524 (+) False LOC103031746
XM_007255370.3 mRNA downstream 245078 54665408 ~ 54689752 (+) True LOC103038902
XM_007255371.3 mRNA downstream 245078 54665408 ~ 54689752 (+) False LOC103038902
XM_022662845.1 mRNA downstream 407294 54827624 ~ 54843995 (+) True tdrd15
TU37650 other upstream 40077 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 765653 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 766445 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 766794 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 767166 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 1812409 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 1870426 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 1916850 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 2981595 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 3389665 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile