RNA id: TU38061


Basic Information

Item Value
RNA id TU38061
length 1643
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G28362
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55462075 ~ 55465285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACCAACACTTCCAGCCATGACTGTAATTTACTTGGTTCAAATTCACCACTATAAGCAGAGTGTAAGTTGTCAATGGAGGGTCAGGTTTTGTTGAAACTACTTTTTCCCTGCTCAACCagtcaaaaacaaataaacttgacaaaaacaacacaaacagaaTCCAAAGGAGATCTGACAAGTATGCAACATGATTTATTAGTGCAAAATTCAAATGCCTAAAACAGATATTCCATGATGTTCCTCAGAAGTGGAATACATGGACACATTTATAATTGGGTACATTCtgtgtaaacacacagaatGACACTAACTATTTTTAAGTGCTTGAGTGTTGGGTAAGAGTATTGCACTGTAACTGTGTGCAGCAACTGAAACGTTTCATCCTGTTCCAAAGTTCAGACTGTGTAGTTTTGCTGATGTGCACCCTGCCACACATTtccaaattatatataaaaacagaaacacaagtCTTCATGATAAATGCTACAAAACTGATAACCagttaaatgctctaaatggttcacaaaaaaaaaaaaaaaaaaacacaattacataGAAAACACTTGTATTTGATCAGAATAACAATGATttatataaagatttttttcacATTCAGACAGGACTGGGCTGCAAGCTGCCATCAATATcctctttttaatttttcttcacCATCAATTATTGTCTGATGCAAACTTTTCCTGGCATCTTCAAAATTTGGATTCATttccagtgtctttttgaagtCACTCTCAGCATCCTGAAAAAAAACCCGGTGGTGGTGCAGGTGTTGATAAACTGTGTGTAGAGCTCCTCGGCTTGATGAAAGTTTCCGCTGTTGAACTGGAGGTGAGCTTCTTTCAGCAGACCTGCAGATCTCTCTCTGAGCTCCTGAGTCTCCATGAGCTTCAGCTGCTGCTGTGTTTCTCGCTGAGTGTCGGACACTCTGGTGGTGCTGCAGCCCCGTGTCCTCACACTGCGCCCCCGCTGGACAGGAGCCGAACTGAGCCCTGAACACTCACAACATATCAACACATAGTTCACACTTAGGGCTCTATCTAAGGCTAGCCACATTGcgtaaatcagattttttggctAGATTggatcttgacggttcacattcacaaatgtaagtgacctgtatctgtgtgtaatgtgaacgaatctgtccctgatgAAACATCTCACATGAGCACGCTGATACGTATAGTCGTCGCCTTcttatagctgcacagctgcaccaagagatgtgtgggtacaagaaaagaaaagaaaagagaacaaaagaaaaaagacacattaattcagatttgaccgttcacattcatacATATCCGATTTAGCACCACATATGGAAGTGGCTCCCCAGATAGCAAAATGCATTAGGCCTGGATCTGGGAGGGAACTGTCATGAAATCCGGGCCAGATTTTTGTGTTTCTTCGGCCCAGAGCAGCTCAGATCCACTTACCACTtacggtggttcagtgaagcggcagctgtgaatatcaaaccaacttcagccggggaatacgaggctgcgaatatcgagccaaacgaatctggagctgcgaatatcaaaccaacttcagcctcgttactcctgcTGACCAGCTGCATTTTTACTGCTATAATACAGCATATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38058 lncRNA upstream 2775 55458993 ~ 55459300 (+) True G28361
TU38042 lncRNA upstream 72067 55380604 ~ 55390008 (+) False LOC103023616
TU37988 lncRNA upstream 297056 55163794 ~ 55165019 (+) True G28302
TU37986 lncRNA upstream 299119 55162490 ~ 55162956 (+) True G28300
TU37826 lncRNA upstream 763710 54695195 ~ 54698365 (+) True G28212
XR_002648716.1 lncRNA downstream 18221 55483506 ~ 55487476 (+) True LOC111189292
TU38151 lncRNA downstream 76964 55542249 ~ 55564694 (+) True G28417
TU38222 lncRNA downstream 429339 55894624 ~ 55952107 (+) False G28460
TU38223 lncRNA downstream 484342 55949627 ~ 55960470 (+) True G28460
TU38383 lncRNA downstream 633378 56098663 ~ 56100801 (+) True G28588
XM_007253914.3 mRNA upstream 19936 55432080 ~ 55442139 (+) True lin9
XM_007253916.3 mRNA upstream 36408 55407374 ~ 55425667 (+) True parp1
XM_015607044.2 mRNA upstream 58745 55380720 ~ 55403330 (+) True LOC103023616
XM_015607051.2 mRNA upstream 150981 55308153 ~ 55311094 (+) True LOC103035140
XM_007253924.3 mRNA upstream 165625 55266088 ~ 55296450 (+) False LOC103024560
XM_022662984.1 mRNA downstream 1841 55467126 ~ 55481255 (+) False LOC103047723
XM_022662981.1 mRNA downstream 1843 55467128 ~ 55481255 (+) True LOC103047723
XM_022662985.1 mRNA downstream 1847 55467132 ~ 55481255 (+) False LOC103047723
XM_022662987.1 mRNA downstream 1849 55467134 ~ 55481255 (+) False LOC103047723
XM_022662986.1 mRNA downstream 1857 55467142 ~ 55481255 (+) False LOC103047723
TU37650 other upstream 1082769 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 1808345 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 1809137 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 1809486 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 1809858 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 767454 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 825471 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 871895 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1936640 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 2344710 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile