RNA id: TU38222


Basic Information

Item Value
RNA id TU38222
length 533
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G28460
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55894624 ~ 55960470 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctctctctctctctctctctctctctctctctctctcacacactttctctctctcttttttgtcatACACATACAAACATTCACAAAGCTTTCACACATGTGTTCTCTCCATCCAACAGCAGCCCTCGATAACAGGGCCGTAAAAATAAAACGAATGAAATGATGTCACCGCAATGACAGGATGAGTAGCGTCTGCTCTGTGTAGGagggatgatgatgaagatgatgatgagtgGTGCCGGGAATGTGAAACCCTCAGCGAGGGCCAGGAACTGAGACATCTCTGTGATTGTACAGTTAATGTGGTGTGAACAGGGTGGAGACGAGGAAAGAgggatagatgaatggatggatagatgtcTGTGTGGATGAatagagaaaggagagagagactggcTTTGTAGTCTGTCGCTCTGATAAGGGTTCAGAGCACTATCTCCTTCTGTCCTCCACAAGTAGCTTCTCGTTTCCTGCTTTTTGGAATGCTACGCTTCCCATACAACCACCTCACCACCGTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38151 lncRNA upstream 329930 55542249 ~ 55564694 (+) True G28417
XR_002648716.1 lncRNA upstream 407148 55483506 ~ 55487476 (+) True LOC111189292
TU38061 lncRNA upstream 429339 55462075 ~ 55465285 (+) True G28362
TU38058 lncRNA upstream 435324 55458993 ~ 55459300 (+) True G28361
TU38042 lncRNA upstream 504616 55380604 ~ 55390008 (+) False LOC103023616
TU38383 lncRNA downstream 146556 56098663 ~ 56100801 (+) True G28588
TU38389 lncRNA downstream 170030 56122137 ~ 56122799 (+) True G28593
TU38390 lncRNA downstream 174055 56126162 ~ 56126455 (+) True G28594
TU38391 lncRNA downstream 177244 56129351 ~ 56129680 (+) True G28595
TU38423 lncRNA downstream 227356 56179463 ~ 56187540 (+) True G28623
XM_022663102.1 mRNA upstream 5948 55666605 ~ 55888676 (+) False LOC103034817
XM_022663114.1 mRNA upstream 5948 55690610 ~ 55888676 (+) False LOC103034817
XM_022663094.1 mRNA upstream 5948 55690611 ~ 55888676 (+) True LOC103034817
XM_022663113.1 mRNA upstream 5948 55690611 ~ 55888676 (+) False LOC103034817
XM_022663116.1 mRNA upstream 5948 55690611 ~ 55888676 (+) False LOC103034817
XM_007232923.3 mRNA downstream 240272 56192379 ~ 56227029 (+) True susd6
XM_007232922.3 mRNA downstream 280676 56232783 ~ 56239722 (+) False LOC103029514
XM_022663229.1 mRNA downstream 309529 56261636 ~ 56274328 (+) False max
XM_022663234.1 mRNA downstream 309529 56261636 ~ 56274328 (+) False max
XM_022663217.1 mRNA downstream 309554 56261661 ~ 56274328 (+) True max
TU37650 other upstream 1515318 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 2240894 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 2241686 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 2242035 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 2242407 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 280632 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 338649 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 385073 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1449818 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1857888 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile