RNA id: TU38223


Basic Information

Item Value
RNA id TU38223
length 2647
lncRNA type inter_gene
GC content 0.31
exon number 3
gene id G28460
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55894624 ~ 55960470 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTTTACAACGCTAGCTTTATTTGAATGAAATATAGACATGTATCCATACTATTAACAGCTTgtggaataaaaaaaggaaaagaccATGCTACATAACATCGCCTAATGCTCTCATCGGTTATTtgttaatattacaatattaggGCTTAAGATACATAGGTATACAATTTGTACAAATGTTAAGGAACTTCACAGTAATATTCTATAAAAAGCTGAGAAAAGGATGCACGCTGGGTGTTCGTACAAGCTGTGACAGGAGTACAGAGATTTGGACTATTCTCTATTTCATCTATGATTtgcaaaaataaagcatcttCTGCCGGGGTCCTGCACATGCTCTCTGTGTACTTGGCCTGCCCAGTGTCACTGTGATTACGACAACACACTGAGTGAAAATGAGTGAAGAACCAGAGAGGAcgtggtgatgatgatgttcTTCATGTGTGGATATGAAGAAGAGAGACCTTTATATTGCATTTCTTTAATCTATTAAATCAGCAGGTCTCTCCTTAAATAATATGGCAGGGAAATCAAAGTgaaatgaatggatgaatgaacGACAAATCTATCCCCTCATACACACAGACTGCcaccttctcttttttgctCATATGTCACATTTAGGGAGTAAAGGAACAGAAAGCACGGTAATATAGTCAAACGAACTGTTATATGTAAAGCATTGGAGAAGACAAACTATCATATTTTggatgaataataataataacaataataataataccattaGCCTATAATACAGAGCCGAgagacataaaaacaaaagtgttctAAATGAGCATTACCAAGATTAAAAAACAAGGAGTGTGAATAAAGGCCAGCTGACTGGCTGACTAGTCTTGGAGTCGACACCAGAGGGCGCAATAACACTACCTAGTCTGTGTATTACACCACTGTTTATGTCATGAAAAAACctgtatctcctgttttactgtgtttcacTGTTTTCATTACGTGAATTTGTCTGGTGTTCTTTAAATTGAGTCCTAATTTGATAATGAATGGATTAAAAGAATTGCTCCATAAAAATCtccaataaaatcctttaacgttgttttttctctgtgtttcttctaCTCCTGTAAAATTGTCcttttggagatacaagatAATTAAACAACAAGTGACAACATTCTCCTCCATATCACTCAGTGTAGAAAACAGTCCACGTACAGGGTGTCCAATCTTCTCTGTAACAAGGCTGAAATGGACATACACAGCTAGCTTTTCCTGTCCTTTCCTTTAACCACTTTAAGTGATTCAAAAATCATTCATTGTGTGGAATAAAACATGTAGCAGCCACATTGGCACTTTGCAGACCCTTGTGGACCATTCCAGATCTTCTGTGGAgaagattggacacccctgctccaCATGAAACCAGTTAAACAATACCAAAGtaaagttcatttatttttatgtggctACAAACTGTGAAAGTGTCCATTCTTAACTGGACGTCTGAGAGCGTGCACAGATGCACTTAAGCTGTCCAAAAGAATTAAAGAACACCAATGACACCAGTTCAGGTTCAGCGGTTGCCTCTATTTCAGGGCTTTGTGGTGCTTGTTCCACAGATTCTTCTGGCTTGTCTTCGGTAGGTTTGGTATCATTAATGGGTTTGGCTTCATCAACAGTGTCAGCAACAGGGATCTCAGTAACTTCACTTGTTGTAGTTTGAACAACAGGTTCAGCCTCCTGGGGTGGTTCAGGCTCACTTGTCACCTCAACCTGCACCTTCTCCTCTTCTGCTTTCTGTTCCTCAGTGGTAGATGGCACAATTTCAGGGCTTGCTTCAGCCTTGTTCTCCTCTGTAGGAGCTGATTCCTCAACCTGTTCGCTTTTTGGCTCTTCCTCTGCTTCCTCTTTCACCTCTTTGTCTTCAGCTACTGCCTCTTCTGCTTtctcttcagtttctgttaTATCTTCCTCTAGAGGCTTCTCCTTCACTGCTTCCTCATCTTTGGATTTCTTGAAGCTTGTCTTTTTACGCAGGTTCGAGAAGATTCCCTGAGTAAAGAATCTTTTGAAGGGGGACTGTGTCTCCTGGGAGGGTGGGCTACTGGAGGACTCTGTTTGCACCTctgcttctttctctttctctggCACTTCTTCAGCTTGCTGCTGTTCAGGTTCTGCAACACTGTCTTTTACGACCTCTGCCGGTGCATCGGTTGCAGCAAGATCTGTTACTGCTTCTGCCTGCACAGCATCTTCAGTGGTtgcctctttctctgtctctggaGCATCAGGTGCACTTTCTTTCTCAGGCTTTTCTTCCTCTGTTGCAGCCTCCTCCTTGCTTTCCTCTGCAGTAGCAGCCTCTGAAGCACCATCGTCGGTTTCCTTCACTGTCAGTAGCTGCACAGGTTCAGCCTTCTCATTCTTGTCCTTCTTCAGTGTGAACTTAAAGCCCACAAAGCGGAAGATCTTTTTGAAGCCCACTTCGTTTGACTCATTAGGCTTATCCTCAACCTTCTCTTCACTTACAGATGTAGTTTTATCTACACTGATAGATTTATCCTCTTCTTGGTCTCCATTAACTTGTGGGGAGACCTCATCCTGGAGCACCTCAATGCTCTCGGGGCTGTCCTCCTTCTGAGGCATGGCATCTGTTTGGCCAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38151 lncRNA upstream 384933 55542249 ~ 55564694 (+) True G28417
XR_002648716.1 lncRNA upstream 462151 55483506 ~ 55487476 (+) True LOC111189292
TU38061 lncRNA upstream 484342 55462075 ~ 55465285 (+) True G28362
TU38058 lncRNA upstream 490327 55458993 ~ 55459300 (+) True G28361
TU38042 lncRNA upstream 559619 55380604 ~ 55390008 (+) False LOC103023616
TU38383 lncRNA downstream 138193 56098663 ~ 56100801 (+) True G28588
TU38389 lncRNA downstream 161667 56122137 ~ 56122799 (+) True G28593
TU38390 lncRNA downstream 165692 56126162 ~ 56126455 (+) True G28594
TU38391 lncRNA downstream 168881 56129351 ~ 56129680 (+) True G28595
TU38423 lncRNA downstream 218993 56179463 ~ 56187540 (+) True G28623
XM_007253894.3 mRNA upstream 677 55936150 ~ 55948950 (+) True LOC103042812
XM_022663106.1 mRNA upstream 60951 55690611 ~ 55888676 (+) False LOC103034817
XM_007232923.3 mRNA downstream 231909 56192379 ~ 56227029 (+) True susd6
XM_007232922.3 mRNA downstream 272313 56232783 ~ 56239722 (+) False LOC103029514
XM_022663229.1 mRNA downstream 301166 56261636 ~ 56274328 (+) False max
XM_022663234.1 mRNA downstream 301166 56261636 ~ 56274328 (+) False max
XM_022663217.1 mRNA downstream 301191 56261661 ~ 56274328 (+) True max
TU37650 other upstream 1570321 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 2295897 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 2296689 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 2297038 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 2297410 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 272269 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 330286 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 376710 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1441455 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1849525 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile