RNA id: TU38404


Basic Information

Item Value
RNA id TU38404
length 368
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G28604
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56126157 ~ 56126524 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agctagtgtaacctctgcttatattgtcaaatttttatatccccacagaacacgtttttaaaacgttattcagctctattcaaaaaaggtgtggttatggtaaaagggctgcttatgggcgggaccaataacagaccgtcagctccgctctgccccgctctgcagcctgtgaccgcgaggcagccctcaggggcggggttatttaaatgagtaggctgtctctccacagtctttctccctcctctggtctctactgcgcagaatcaggtggcaggatcgccaacatggcggaagattttggcttcattttcattgaatgaatgggaacggagacacggcgtccatctttttttacagtctctgattta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38358 lncRNA downstream 231318 55894509 ~ 55894839 (-) True G28567
TU38359 lncRNA downstream 236054 55886323 ~ 55890103 (-) True G28568
TU38259 lncRNA downstream 489127 55634544 ~ 55637030 (-) False gtf2h5
TU38276 lncRNA downstream 489497 55635525 ~ 55636660 (-) True G28505
XR_002648717.1 lncRNA downstream 624676 55499908 ~ 55501481 (-) False LOC111189318
TU38406 lncRNA upstream 2671 56129195 ~ 56129732 (-) True G28606
TU38417 lncRNA upstream 20652 56147176 ~ 56147738 (-) True G28617
TU38440 lncRNA upstream 63965 56190489 ~ 56190689 (-) True G28634
TU38483 lncRNA upstream 88020 56214544 ~ 56227854 (-) True G28661
TU38478 lncRNA upstream 106183 56232707 ~ 56239723 (-) True G28657
XM_022663154.1 mRNA downstream 597 56055205 ~ 56125560 (-) True mthfd1l
XM_022663141.1 mRNA downstream 82872 55949627 ~ 56043285 (-) True LOC103043128
XM_022663148.1 mRNA downstream 160270 55949627 ~ 55965887 (-) False LOC103043128
XM_007253896.3 mRNA downstream 194971 55924510 ~ 55931186 (-) True armt1
XM_022663135.1 mRNA downstream 206911 55889783 ~ 55919246 (-) False LOC103043741
XM_007232924.3 mRNA upstream 27190 56153714 ~ 56170803 (-) True gpr176
XM_022663172.1 mRNA upstream 46933 56173457 ~ 56187855 (-) False LOC103032431
XM_022663175.1 mRNA upstream 46933 56173457 ~ 56187847 (-) False LOC103032431
XM_022663178.1 mRNA upstream 46933 56173457 ~ 56180131 (-) False LOC103032431
XM_022663181.1 mRNA upstream 56548 56183072 ~ 56187719 (-) True LOC103032431
TU38322 other downstream 309559 55815872 ~ 55816598 (-) True G28536
TU38270 other downstream 519271 55602870 ~ 55606886 (-) True G28501
TU38271 other downstream 519875 55602870 ~ 55606282 (-) False G28501
TU38133 other downstream 624397 55499900 ~ 55501760 (-) True LOC111189318
XR_452898.2 other upstream 519503 56646027 ~ 56694125 (-) False LOC103031416
TU39086 other upstream 2042797 58169321 ~ 58174704 (-) False LOC111189852
TU39330 other upstream 2806439 58932963 ~ 58934789 (-) True G29317
TU39539 other upstream 3311076 59437600 ~ 59438298 (-) True G29478
TU39714 other upstream 4031014 60157538 ~ 60162024 (-) False LOC103034188

Expression Profile