RNA id: TU38437


Basic Information

Item Value
RNA id TU38437
length 217
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G28631
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56189253 ~ 56189469 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAATGGTGTGAAATAATATCAAAATGAAACTCATTGCAGTCTTCCAAACATTGGCcctgtaatattttaaatgatgatttatgATGTACTTGATGTGTATATTAGTGTATGGTTGGCATTAGGCTAGTGTGATTAAATCCTGGCCAATATTACTTCACCTTTCTACAGCACCACACAACATATGAGTATGTGTGCTAATATACATGGGTCAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38435 lncRNA upstream 499 56188505 ~ 56188754 (+) True G28629
TU38423 lncRNA upstream 1713 56179463 ~ 56187540 (+) True G28623
TU38391 lncRNA upstream 59573 56129351 ~ 56129680 (+) True G28595
TU38390 lncRNA upstream 62798 56126162 ~ 56126455 (+) True G28594
TU38389 lncRNA upstream 66454 56122137 ~ 56122799 (+) True G28593
TU38438 lncRNA downstream 137 56189606 ~ 56189835 (+) True G28632
TU38439 lncRNA downstream 598 56190067 ~ 56190283 (+) True G28633
TU38443 lncRNA downstream 24982 56214451 ~ 56227860 (+) True G28637
TU38474 lncRNA downstream 124569 56314038 ~ 56314756 (+) True G28654
TU38534 lncRNA downstream 413020 56602489 ~ 56602883 (+) True G28702
XM_007253894.3 mRNA upstream 240303 55936150 ~ 55948950 (+) True LOC103042812
XM_022663115.1 mRNA upstream 300577 55690611 ~ 55888676 (+) False LOC103034817
XM_007232923.3 mRNA downstream 2910 56192379 ~ 56227029 (+) True susd6
XM_007232922.3 mRNA downstream 43314 56232783 ~ 56239722 (+) False LOC103029514
XM_022663229.1 mRNA downstream 72167 56261636 ~ 56274328 (+) False max
XM_022663234.1 mRNA downstream 72167 56261636 ~ 56274328 (+) False max
XM_022663217.1 mRNA downstream 72192 56261661 ~ 56274328 (+) True max
TU37650 other upstream 1809947 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 2535523 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 2536315 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 2536664 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 2537036 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 43270 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 101287 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 147711 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1212456 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1620526 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile