RNA id: TU38439


Basic Information

Item Value
RNA id TU38439
length 217
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G28633
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56190067 ~ 56190283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttatattttaacagACACTGGTTAATGAGTAAAAGACACAAAAATTAGGGTTTTCTTCAAACATGGCAACATTACCTGTGAACTTGTTATACATGATGCTGCCCTCTAGCGTTTGGAGTGCCATAGTGACTCCAACAGAGGAactttttaagtaagtacaatCCATCACAATTTCTatgaaacacagaaaacactcaGTATAACTTTTGCTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38438 lncRNA upstream 232 56189606 ~ 56189835 (+) True G28632
TU38437 lncRNA upstream 598 56189253 ~ 56189469 (+) True G28631
TU38435 lncRNA upstream 1313 56188505 ~ 56188754 (+) True G28629
TU38423 lncRNA upstream 2527 56179463 ~ 56187540 (+) True G28623
TU38391 lncRNA upstream 60387 56129351 ~ 56129680 (+) True G28595
TU38443 lncRNA downstream 24168 56214451 ~ 56227860 (+) True G28637
TU38474 lncRNA downstream 123755 56314038 ~ 56314756 (+) True G28654
TU38534 lncRNA downstream 412206 56602489 ~ 56602883 (+) True G28702
TU38591 lncRNA downstream 505568 56695851 ~ 56697851 (+) False dcaf4
TU38654 lncRNA downstream 630307 56820590 ~ 56823036 (+) True G28776
XM_007253894.3 mRNA upstream 241117 55936150 ~ 55948950 (+) True LOC103042812
XM_022663115.1 mRNA upstream 301391 55690611 ~ 55888676 (+) False LOC103034817
XM_007232923.3 mRNA downstream 2096 56192379 ~ 56227029 (+) True susd6
XM_007232922.3 mRNA downstream 42500 56232783 ~ 56239722 (+) False LOC103029514
XM_022663229.1 mRNA downstream 71353 56261636 ~ 56274328 (+) False max
XM_022663234.1 mRNA downstream 71353 56261636 ~ 56274328 (+) False max
XM_022663217.1 mRNA downstream 71378 56261661 ~ 56274328 (+) True max
TU37650 other upstream 1810761 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 2536337 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 2537129 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 2537478 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 2537850 53652135 ~ 53652217 (+) True trnal-cag_6
TU38445 other downstream 42456 56232739 ~ 56239729 (+) True LOC103029514
TU38475 other downstream 100473 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 146897 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1211642 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1619712 57809995 ~ 57812488 (+) False LOC103042006

Expression Profile