RNA id: XM_007232922.3



Basic Information


Item Value
RNA id XM_007232922.3
length 1631
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC103029514
representative False

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56232739 ~ 56239729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TAGTAGCTGGAGGACACTCCGCTGTTTCCTCGCTCTGACGCCATTTTGTGAGTCGTCGTTGATCAGCAGCTGATCTCTTACACTGCCGTGTGAAGTGCAGGGAAGgcCTCTGTTTGTGGATCATGAGCGGCTGTCGTATATTCATCGGGCGGCTGAATCCCTCCGCCAGGGAGAAGGACGTTGAGCGCTTCTTCAAGGGCTACGGGAGGATCAGAGACATCGACCTAAAGAGAGGCTTCGGGTTTGTGGAGTTTGACGATCCGAGAGATGCTGAGGATGCTGTATATGAGCTTGATGGGAAAGAGCTGTGCAATGAGagGGTGACTATAGAACACGCACGGGTCCGCCTGCGTGGAGGCAGGGGTCGGGGAGGCGGAGGACGCTTCCCAGATCGTTATGGCCGTGGCTCACAGGATAGCCGGAGGAATCCCCCTCCGATGCGCACTGAGAACCGTCTGATTGTAGAGAATCTTTCTTCAAGAGTGAGCTGGCAGGACTTGAAGGATTTTATGAGGCAGGCTGGAGAGGTTACCTTTGCTGATGCTCATCGCCCAAAGCTCAATGAGGGTGTGGTTGAGTTTGCCTCCCACAGTGATCTGAAAAATGCTCTGGAGAAGCTATCTGGGAAAGAAATCAATGGAAGGAAGATCAAGCTCATTGAGGCAGCCAGGAAAAAGTCCAGAAGTCGCTCCAGGTCCAACAGCTCATCCCGTTCCCGTTCTCGTAGTCGCACGCCATCCCGCAGCCCCAAAGCCCACAAACGCTCGCGCAGCCGATCCTCAACCCCCTCACCCTCCCCCACCCAAAGAGCTAAGGAGACGAAGCGGGCCCGTTCAGAATCCAGATCTCCCCCACCCCAGCGGGCCCCAGCCTCTCGCTCTCCATCCACCGACAGCCGCTGCTGAAGCAGCTCCACCCATCCCGCTGAAGCTTCACTCTTCGGTCAGACACTGTTGGTCACGCTTGTGTTTGTTTAGCATCTGTTCCAAACTGGCGTTTCAACCCTTGTGAGCGACGGGACAGATTTAATATCTTTACAGCCACTGATAGCAGCAGTGACCTCGAGTCTGAAGCCTGCTGTGCACTCACAGTCTTCAGAGGTAAATTCATGTCCGTAGACAGAGCTGCAGTTTTCTACTGTTCTCGGTAAGCTTTGCGTTTGTGTCCTCTGAGTAGTGTCACATTTCCCCTGAATGAGAGCTGTGATCTTGCTAGTAATATTAATAGGTGAGtaccttttttatattaatttgtgCTTTTAGTCATTGTGTAACAGGAAACATTCAAATGCTGTTGTGGCACCTTGCATACTTCAAGCAaatgttgtgtgtttgttttatgtttcatCAGTCAAATATAATTTTCGTTTCACTTGATAGCGCTGAAATTGAGGACCTTGTTTAATAAATTGGTGCaagtttaaacatgttttaataattgTGTGGAATTTGgaattgtatgttttatttcagcATCAATATGGGTGTTGGCATAAAGGGTTTTGATGCATGCCACCTGACTGGGAATTGTCTGTCATTTTCTTATACTCTTCTACTGTAAACAAACCTTTCAATATCATTGGACATTGATTTGAATTCATGTATTACCAAATAAACTCACAAGAATCCAAA

Function


GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38443 lncRNA upstream 4923 56214451 ~ 56227860 (+) True G28637
TU38439 lncRNA upstream 42500 56190067 ~ 56190283 (+) True G28633
TU38438 lncRNA upstream 42948 56189606 ~ 56189835 (+) True G28632
TU38437 lncRNA upstream 43314 56189253 ~ 56189469 (+) True G28631
TU38435 lncRNA upstream 44029 56188505 ~ 56188754 (+) True G28629
TU38474 lncRNA downstream 74316 56314038 ~ 56314756 (+) True G28654
TU38534 lncRNA downstream 362767 56602489 ~ 56602883 (+) True G28702
TU38591 lncRNA downstream 456129 56695851 ~ 56697851 (+) False dcaf4
TU38654 lncRNA downstream 580868 56820590 ~ 56823036 (+) True G28776
TU38691 lncRNA downstream 584966 56824688 ~ 56824999 (+) True G28805
XM_007232923.3 mRNA upstream 5754 56192379 ~ 56227029 (+) True susd6
XM_007253894.3 mRNA upstream 283833 55936150 ~ 55948950 (+) True LOC103042812
XM_022663115.1 mRNA upstream 344107 55690611 ~ 55888676 (+) False LOC103034817
XM_022663229.1 mRNA downstream 21914 56261636 ~ 56274328 (+) False max
XM_022663234.1 mRNA downstream 21914 56261636 ~ 56274328 (+) False max
XM_022663217.1 mRNA downstream 21939 56261661 ~ 56274328 (+) True max
XM_022663223.1 mRNA downstream 21939 56261661 ~ 56274328 (+) False max
XM_007231520.3 mRNA downstream 51025 56290747 ~ 56312111 (+) True LOC103033217
TU37650 other upstream 1853477 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 2579053 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 2579845 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 2580194 53652508 ~ 53652589 (+) True trnas-uga_10
trnal-cag_6 other upstream 2580566 53652135 ~ 53652217 (+) True trnal-cag_6
TU38475 other downstream 51034 56290756 ~ 56303210 (+) False LOC103033217
TU38502 other downstream 97458 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1162203 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1570273 57809995 ~ 57812488 (+) False LOC103042006
TU39139 other downstream 2177672 58417394 ~ 58418817 (+) True G29155

Expression Profile