RNA id: TU38475


Basic Information

Item Value
RNA id TU38475
length 473
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC103033217
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56290747 ~ 56312111 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTGAGAGCATCCCTGATCACCGCACCCTTCACTCagggctgctgctgccgctgctctGCTCCACTTTCTCCGTGAGCTCGGCGGCTCTTCAGGCTTATTATCACAGGAGCGGCTGGTCTGTGGAAGGAGCGAGAAGGTTTGTGTAGTCAGTCTGCAGACATGGGCTGGAGCTGCTCTGCTGGGAATCCGCCGCTGCTCTAGCATAACCGCTCCTACACGACATCATGGCCAAGCAGTACGATGTTCTGTTCAGACTGCTGCTGCTCGGAGACTCCGGCGTGGGGAAGACCTGCCTGTTATGCAGATTTACCGACAACGAGTTCCATCCTTCTCACATATCCACCATCGGGgtggattttaaaatgaagacgCTAGAGATAGATGGCATCAAAGTAAGAATACAGATATGGGACACAGCAGGCCAGGAGAGATATCAGACCATCTCTAAGCAGTACTACAGACGAGCACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38443 lncRNA upstream 62896 56214451 ~ 56227860 (+) True G28637
TU38439 lncRNA upstream 100473 56190067 ~ 56190283 (+) True G28633
TU38438 lncRNA upstream 100921 56189606 ~ 56189835 (+) True G28632
TU38437 lncRNA upstream 101287 56189253 ~ 56189469 (+) True G28631
TU38435 lncRNA upstream 102002 56188505 ~ 56188754 (+) True G28629
TU38474 lncRNA downstream 10828 56314038 ~ 56314756 (+) True G28654
TU38534 lncRNA downstream 299279 56602489 ~ 56602883 (+) True G28702
TU38591 lncRNA downstream 392641 56695851 ~ 56697851 (+) False dcaf4
TU38654 lncRNA downstream 517380 56820590 ~ 56823036 (+) True G28776
TU38691 lncRNA downstream 521478 56824688 ~ 56824999 (+) True G28805
XM_022663229.1 mRNA upstream 16428 56261636 ~ 56274328 (+) False max
XM_022663234.1 mRNA upstream 16428 56261636 ~ 56274328 (+) False max
XM_022663217.1 mRNA upstream 16428 56261661 ~ 56274328 (+) True max
XM_022663223.1 mRNA upstream 16428 56261661 ~ 56274328 (+) False max
XM_007232922.3 mRNA upstream 51034 56232783 ~ 56239722 (+) False LOC103029514
XM_022663270.1 mRNA downstream 33946 56337156 ~ 56453934 (+) False sipa1l1
XM_022663274.1 mRNA downstream 33946 56337156 ~ 56453934 (+) False sipa1l1
XM_022663250.1 mRNA downstream 33947 56337157 ~ 56453934 (+) False sipa1l1
XM_022663277.1 mRNA downstream 33947 56337157 ~ 56453934 (+) False sipa1l1
XM_022663255.1 mRNA downstream 34411 56337621 ~ 56453934 (+) True sipa1l1
TU38445 other upstream 51027 56232739 ~ 56239729 (+) True LOC103029514
TU37650 other upstream 1911450 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 2637026 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 2637818 53652857 ~ 53652938 (+) True trnas-aga_7
trnas-uga_10 other upstream 2638167 53652508 ~ 53652589 (+) True trnas-uga_10
TU38502 other downstream 33970 56337180 ~ 56399441 (+) False sipa1l1
TU38768 other downstream 1098715 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1506785 57809995 ~ 57812488 (+) False LOC103042006
TU39139 other downstream 2114184 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 2894992 59198202 ~ 59198284 (+) True trnal-cag_8

Expression Profile