RNA id: XM_022663255.1


Basic Information

Item Value
RNA id XM_022663255.1
length 9122
RNA type mRNA
GC content 0.52
exon number 21
gene id sipa1l1
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56337156 ~ 56453934 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCCAGAGTTACAGGTGGCAGCGATGCTGCGGGCTCTCTCTCTCCGGctctatttgttttaattaagctGTCTAGCCACGTTCATCGCTGCGCTTCGTCTGCTGTCGTCGAGTGAACCTCAGTGTAAGGTCTGGTTTATGTGGAAGAGAGCGAGGAGAGGGGGAACTCGAGGTGTTTATACGGTCAAGACGAGCAGTGAAGAGGGAGGCGAGGATCCTCTGCTGCGTTCTGAGCAGCTCCAGCTGTGGAGAGAGCAGGAGAAGCAGGAGCAGGGTCTGTGTCCATTGCGAGAATTGAGCTCACCTCAGAAGTAATGGAGGAGGACGTCTGACCACTTTGCCTCATTGCCATGTGTTTTGCCTTACGAATCGCAGTCGTCCCTGTGGCAGCTCGTACTCTCCAGGGCCTCTTATTCTGATCATTCGGCCGGCATGCCCTTGTGCTGAGTTCCATTCCCCAACATTGTCATGACCAGTCTGAAGCGTTCCCAGACAGAGCGCTCTGTGGGGGGCTCTGTGCCCGCCTCAGATGAGTTCTACACCCGTCGCCTGCGCTTGCCAAATGGAGGTGCTCCACCCCCACGCAGCGAGAGCACCCACCTGTCTGGATGCACACCTGGAGTGCCCAAGATGGGAGTGCGAGCAAGAGTCGCTGATTGGCCCCCAAGAAAAGATGGTGGCAGTAGTGGTGGAAGCggtgggggaggaggaggaggcagcggaggaggaggaggagggggagggagTGGAACTGGGAGTAGCAGTGGAAGTGGTAGTGGCAGTAGTGGAGGAAGTGGAGGAAGCGGTGGAGGAGGAAGTGGAGGAAGTGGAAGTGTGTGGCACATAACTGTGGAGACCGAATCGCCAACCGCCACACAGAGCTCCCAGAGCAACCTATCCGCCAAGCTGGGTCACCTGATCAGCCCGCAGGATTCCTCTATGCTGCGTAACATTCAAAACACTCTGAAGAACAAGATGCATAGCAAGGGCAAAGACAACCGCTTCCTGTCCCCTGACGGCTACCTAGGTTCTCCACGCAAGGGCATGCGCCGCATCCGTCAACGCAGCAACAGCGACATTACCATCAGTGAGTTAGATGGAGATGGCAATGAGGGCTGGTCATTCTCTGGATGGACCCCAATGCACCGGGAGTATGGCAGCACCTCATCTATTGACAAGCATGGGGTCTCAGGAGAGAGCTTTTTTGACATGCTTAAAGCCTACCAGACAGATGCCCCAGATCAGCGTAGCCCTGCTCCAGAGAAACTAAGCGAACTTCTTACTGTAGCCCACAAACAGACTGCGCTTGACCTCCCGGATGGTCCTCTGGGACCCCCAAGAGGAAGTCCTGCAAGTCGCCTGAAGGAAAGGGAGAAACACCTGAAGAGGCGCTCCAAGTCCGAGACTGGGGGCGAATCCATATTCCGCAAGTTACGAAGTGTGAAGGTAGAGGGAGATTCTTCTCGTGCTGGTTCTGATGCGGAAGATGGAAAGTCTGATGATGCGGGTCCTCCACCAAAGCCTTGGGTCTGTCAGAAAGGCTTTGCTCACTATGATGTCCAGAGCATCCTCTTTGACTTGAACGAAGCTGTCCAGAGCCGCCAGAGCGCCGTCAAGAGGAAGAACACCACCACCGGAGCCTCGGCAGCCGCTGCAGCTTCAGCCTCCACCTCATCTTCCCTGTCCTCCACCCAAAGCGGACAATATGGCTCCCCATGTGGCAGCCAAGAGGAGCTTAATGTCAAAGACGGACCCTCACTAGACTCTGGTGACGACAAGAGCAACGACTTGGTCCTCAGCTGCCCCTGCTTCCGTAATGAGATAGGCGGGGAAGGCGAGAGGAATATCAGCCCCTCGAAGCAGGGCAGCATCGGCAGTGGATCGTCCAGCTCCTCCAGGGATGAGGACGGATCTCCAGAGGTGCCCCCTAATACTCATTTCAGCAATGCAGGGGTAGCAGTGCTGGAAGCGCCAAAGGATGGCAAGAGCATTCACCATGAACGGGGAAAGAACAACATTGTGGAACATGTGGACCTTGGGTCCTATTACTACAGGAAGTACTTCTATTTGAGAGAGCACTGGAACTACTTGGGGGTGGATGAGACACTGGGGCCAGTGGCTGTGAGTCTTCGACGAGAGAAACTGGAGGATCACAAGGATCACGGCCCGCAATACAATTACAGAGTCATCTTCAGAACCAGTGAGTTGACAACTCTGCGAGGATCTATAATGGAGGATTCTGTGCCCTCCACTTCCAAGCATGGTTTGGCTCGAGGCCTGCCGCTGAAGGAAGTGCTGGAGTATCTCGTGCCAGAGCTTAATGCTCACTGCCTTCGGCTTGCCCTCAACACACCCAAAGTCACGGAACAACTGATGAAACTGGATGAGCAAGGGCTTAGTTTTCAGCTGAAGGTGGGAGTGATGTACTGTCTGGCAGGCCAGAGCAGTGAGGAGGAGATGTACAATAATGAGGCGGCCGGTCCAGCACTGGAGGAGTTCCTGCAGCTGCTGGGAGAACGTGTGCGCCTTAAGGGCTTCACAAAGTACAGAGCCCAGCTGGACACCAAGACTGACTCAACTGGCACGCATTCCTTATACACCAGCTACAAAGACTATGAAATAATGTTCCACGTCTCTACAATGTTGCCCTACACTCCAAACAATAAACAGCAGTTGCTAAGGAAGCGGCACATTGGAAACGACATTGTCACCATTGTGTTCCAAGAGCCCGGAGCAAAGGCCTTCAGCCCCAAGAACATCCGCTCTCACTTTCAACACGTCTTTGTGGTGGTGCAGGTGCACAACCCCTGCTCTGACAACAGATGCTACAGTGTGGCGGTGGCTCGTTCCAGGGACGTTCCTGCCTTTGGGCCGCCCATTCCGGAAGACGTGAAGTTCCCCAAATCCACCGTCTTTCGGGACTTCCTGCTGGCCAAAGTCATCAATGCAGAAAACGCTGCTCACAAGTCCGACAAGTTCCGAGCCATGGCCACCCGCACTCGGCAGGAGTACCTGAGGGACCTGGCCGAGCGCCACGTTACCAGCACGCCTATCGACCCATCCGGCAAATTCCCCTTCATCTCACTGGCCCATAAACGCAAAGAGAAGAGCCGGCCGTACCCTGGGGCGGAGCTGCGCAGTCCCGGGGCTGTCACCTGGCCCGTGTATGCAGAGGACCACGGAGCAGGAGGAGAGCTGGAGGCCCTGCTGGGTATCTCCAACGACTTCCTTATCCTGGTGGATTCTGAGGCCAAGGCCGTGGTCTTTAACTGTGCTGTGCGGGACGTCATTGGCTGGACAATGGGAAGCCCCGCCTCCATGAAGATTTTTTATGAGCGTGGGGAGAATATCTCACTGCGCTCAATCAACAACAACACGGAGGACTTCCGAGAGGTTGTTAAGCGCCTAGAGCACTTGACTAAAGGCTGTGAAACCAGTGAGATGACCCTGCGCAGAAACGGCCTGGGCCAGCTTGGGTTCCACGTTAACTATGAAGGCATCGTGGCTGAAGTGGAGCCCTACGGGTATGCCTGGCAGGCAGGCCTGCGTCAGGGCAGCCGACTGGTGGAGATCTGCAAGGTGGCGGTGGCAACTCTCTCCCACGAGCAGATGATTGACCTGCTGCGCACTTCCGTCACAGTGAAGGTGGTGATTATTCCACCTCATGAGGATTCTACCCCTCGCAGGGGCTGCTCGGAGCTGTACCGTATGCCAGTCGGGGAGTATAAGGGAAGCTGTGACAGTGGCTCCTTCGAGTACAAGTTCCCTTTccgcagcaacaacaacaagtGGCAACGTACCTCCTCCAGCCCCCAGCAGTCCCTCACCGCCTCTCCTCAGAGCCACACTGGCACTCCCAACCGTGCAGTCAGTCTGGGGGCCAGCATGGGCAAGACCCTGTCCGCTGAGCGCCCAGAGAGAGCTGCTGCCATTCCCCGGAGCGTGTCCAGTGATGGACGCCCTCTGGACTCAAAGAGGATGTCTCCTGGTTCGGAGAACTACTCGCTGGCCTCCTCCATCGTGATGGGCCGCTCCCCTCACAACCGCAGCTCCCCCAGCAACCTCTCCTGCTCTAGTGATACAGGCTCGGGTGGTTCCGCCCACTGGAGGCAGAAGTCCATGCCTGAGGGatttggACCCAACAGACACTCTCCCCTCCCGCCAGAGCGACAGATGATGGGCGAGGGGGGCAGCAGTGGCAAGTCAACCCCGAGCTGGCCCAGAGTGGACGACTCAGACAGAGCATCAGCAGATGCCCCAGTCAGTAAATCTGGACCTTCCTATTCAGGCGGCCCACGCATCCAGCGGCAAGAGCAGGTCATTCACCTCTCCCCCAAGAAGAGCAGCCAGTCGGAGGGCCCCTGCTCCCACTCCAGCAGCAACACACTGTCCAGTACAGCGTCCAGTGGGGGTCACAGTGATGAGAAGTGGTATGATCTTGGCGGAGGAGGACCTGGAGACGGGGGTGACTCTGAGCCGAACGGTTTGGGTGGGGGAGGCTACCTGCAGGGAGCTTCGGCCGACAGCGGCATTGACGCCACTTCCTATGCCCCTCATGGCAGTTCCAGCTCCCTGCTGGCCGTGGGTGCCCCAGCTCCCCGGGAGAGGTCTGCGTCACCCTGGCACGGCCCACCTGAGGGTGGCAGGCGTGTTTTAGAGAGATCCCCTCCAGCAGCAGAGTCACCTGTGTCCCCCGCCGAGGTGCCAACTACGCGCAGCCCCCCGACACACCTACTGGTGCGGGACGGTAGCTCCTACAGCCTGAGTGAAATGGCCTCCCACTCCAGTTCTCGTCACTCTGTGAGCCCCGCTGTGCTGAGCTCCAGCCACAGCTCACCACGAGACGAGTCGCCCTCGGCCACTTCACCCTCCTCCTCCCAGAGCTCAGTCTCTCCAGGCCCCAAGAGCTTCTATCCGCGCCAGGGAGCCACCAGCAAGTACTTGATTGGTTGGAGGAAGCCAGGCAGCACCATCAACTCTGTGGACTTTGGTGACGCACGCAAGAGGCCACAGGGTGAGGGGCCGGATAGTGGACCGCCTCAGTCTCGACCCTCTCTCAGAGACCTGCATTCTCCTCAGCCCCACGGTAAATCCACTGTGGAGGAGGACCTGAAGAAACTCATCACCCTGGAAGCCCCTCGTGGCCATCGTCACGAAGACAAGTCTATGTCCTCCTCTGGCTCATCGGGTACTGGCAGGCGCTCACTCCACCGCACCCTCTCAGATGAGAGTATATATCGTGGTCAGCGACTGCCATCTCTGGGTGACCCAGTACTGGAGCAGGCTGTGGCCAGTGACTTACTATTCAGCTGCTCCACCCTGCCCCGCTCCCCCACGACCCGTGGAGCTCCTCTCCGCAGACCCTCCTATAAACTGGGCATTAAGATGCATGGTGATCTCACCGCATCTGACACCTCTCTAGCAGACCTGCACGAGCGCCAGAGGCACCCCTCCCCAGACCTGGGCCTCATGCCCCTCCCCAACACAGACACCGACAGCGGTCTGGACTGGACCCACCTGGTGGACGCTGCCAACGCTTTCGAGGGTGAGGGGAGACCCCCACGCATCCAGAGAGGGTTTATGTTCAGTTCTCAGGATATCAGTCATCGTGGTGAAAGCTCTGTGAGTTCTCAACAGCTGGATCTGCAACCGGTGCCCCACACTCGTCTCTCTCCCAGTGAGATCCCTGTAGGTTTTGCTGGGAAGATTTCACAGCTAGAAGGCTTGGTGAAGATGTTGCAGGAGGACTTGAAAAAGgagagagaggaaaagctGAAGCTTCAGGCTCAGATCAAGAGGCTGTGGGAGGACAACCAGAGGCTCCAGGAGGAGTCCCAAAACTCTGCTGCCAAGCTCAAAAAGTTCACTGAGTGGGTCTTTAACACCATCGACCTGAACTGAGGCCATGCTGGAGCACTGGGGAGCGCTGAGAAAGAGCCGAAGAACTCCCCACTACTCTGAGCACAAACACCGGGACCAACACAAGCACCAACCTCTGCTTTCAACACGCCAACACTCCCGCACAGACCGTCGACCGTTTCCTGTTTTGGGTTATTGGAGACTGACTCAGAAATGGCACAAAAACCCCCCTCAGATTTTTCCCAGAGAAAGAATTGTTGCTTCATATTTATCAATGAAGGACTTCTTGTCTTACACCCCTCTGGGAGGTTTCAGAAGACTTCAAGCTCAGCTAGTTCAATCACGCTGCTTCACACTCGGACATCTGCATCAGCTGCCCGGTTTTGGAGCCTGTCCGGCTGCTCAGGCCCCACTTTTCCAAGCCCATGCCCTGTGCAGTGCTATCGCACTTTGCTCCAAAGGTGTTCAAATCATTACAGGCCAGAAACTAGAAAAAggtgaaatttaaaaataaagaaactgagTCACCTGGCGTTTCTTATAGACTGTGCTCTGAGAGggaatcgttttttttttgcgctttaAGAAATGCCCTTGCCCTGTTGTGAAATTTTGCTGAGTCACTGTGGTTTCAGAGTTTGTGgattttttccttctctctcttttctttcctttctctttttttgactCTGACAGAGTGTTGTGGCGTGCAGATCTACAATGCAGCAGCAGGATcagtttttaagcatttttaaaggAAGGAAGCCACACTCCATTGTGAGGTGCCATGAAGTGAACAGGTGGTATTGAAGTATGGGCTCTGGTCATTTTCAAAAGCAATAGCAGAAAGTCTAATGTTTTTGATGCCTCTGCTTCTCTGGACTCTAAACAACGTGGAAACTTTTTGTGTGGGTCCCTCTTAAACAAAGCAGTAAGACATCTCAAGCCTTGGTACGAGTGCCAAAGACTCCTGCAGTCTCCATGAATGTTGATCAGGAATAAAAAGACAAGTCTTTTTTTGGGGTGCgggaacaataaatacaataaatacagttatttatttcatttgtattaTAAATACATACGTTGCTCAGTGCTTACAGTacataaatgttcattttacagacaaaatacgctcattatttagtttttttttattataattattattattattattattattattattattattattattattattgattaattccaGTAGAATTCAGCACTGATGCTGAGTATCTTTTTGTATGCTTGTGGTTCCCTAGCCTGCTATTGTTGTGTTGCCTTAGTGCCATCTAGTGGTGAAAAGTGATCGTTTCACTTGACTTCAGCTATAatctgtatttctgttttgtgttCAGATGTTACAGAACCTGCAAGAATCTGCATTTATCATTTCAACCGTTTACGAGGGTTAGAGTTACCCTGagttactttattaaaaacatcagGTCGAGATCAGTGTGCTTGTTCTTTTCTAAGCAGGCTGAGGAGCTCGTTTTGTTGCCGGCATGAAGAGTAGGAGGTTCTGAAAGTGCAGGAACAAAAGAAGCGAAGGAGAACTGATTCTTATTTACGTAAGCTTTGTGGAACCTCTTCTCTTTCACTCGTGGTTGAACCTAGTAACCCGATCCCCGGAGGACGAGGACCTGCTGGATCACGTCATCAGCGCGGTCAATAGTTCACTGTCTTAGCAGGCCAGTGCCAGGCGGCCACGCGATTATGTGCCTACGTGTGCTCTCAGCTATGTGTGGCCGGTTTTTGCATAATGGATCAGGAGACGTGGAGCCGAGCGGAGAGACTGGTGAGAGGAAAGGCTTAGTCAGCCAATAATCAATAGCACTGAACAGCTGTGTCCTGTAATCTCTCGCCCAATCACAGCGCTGTTGCTTCTCTCATCAGTCCCAGCTGACATCTGAAGCTTTCTCCACCCACCCGCCTTCCAAACATAGTGGCGTTTACTGACCAGGGAAATGTCAATCCGCAAAGGCCACGCTCCCGCCTCCCGCCGCATTACCGACCCAATACTGCAGTAACTACAAGCACCACCGCTCTCCACTGAGCAGCGTGTTTCTGAGTGGGCTCTCGAAATGGAGATGCCAGTTGAGTCCTGAGCTTCAGGATGCTTTATTTATtgcagtcagaaagagagaaagagcagccCCAGCGAAGCTCCATTTGAATTTCTGTGTTCGACAGTGAATGGAAATTATCGATTCTGTTCTAGGAATCATGTGAAGCATCTCAACAATATCCATTCTGCTAGCAGCAGGTAAACCAACACTACTAACCCCCTATTGCTCTTCATTCACCCTCAGCTGAAAACCCCCACGTACAGATCAGTGATGTACAATATAGAGAAAGACAGCCTGtctgaattaataaaacatgaccAGTTCCGTTTCTCCTCTACTGTTTCATTCCATCTTCTTCAATCAGGAAGGTTTAAATGAGAGCTCTCTCCAGCTCTCGCACTGCTGAGAATGTGATCCCTGTTTTTTAACGGTTCTGGTTTCTTGCCTTGTGAGGTTTTGTTCTGCCttttccaaagttttttttatttttaaatagtttttttttctgttttgtttgaaAAGGTAAATATTGAAAACTGTGGGAATGTGAATgttaatttcttctttttttcttttatttttcttttgtgtttcatttaattaattatgattCCTTTGCACTGTAAActtcctttttctgtttttattgtatagatttattattgctattattggTTAAAAGTGGACAGAGTCAGACACACTAAACATGTCggtcttaaaaagaaaaaaaaataatcctcgCCCTCCTCATGTATGTGTGGGCCATCACTCCTGAGGCAGGAGAGGCCTGGATCATGCTTCTCTTCCTCGTGTGCTGCCTTTAGAGCGTGTCGGTAGGTGTTCCTCCACAAAGCCCTCTCTCGCCTTTTACGTCTATGAGGAGTCgtgtgtttttaatgatgtgcacattttaaaaggAGCATTATATTTAACAAGAAGTACTGTTTACATATgctgttcattttatttgtaaagtgtAGAGGTTTAAAAAGACGATTTCCAGTGATAACAGTATTaaatttcataaataaataaatgaaaaaaaaaacttgatttgaGGTGCTGTAATTTTTCATGAAGTGGTCAAAATGATAGGCTGTTGCTTGCCGCCTGCTCTATTGAGGTGTATACTCTGCCATTGCTTTCTGGgccaataaattaatttatattcatAGGTGAA

Function

GO: NA

KEGG:

id description
K17701 SIPA1L1, E6TP1; signal-induced proliferation-associated 1 like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38474 lncRNA upstream 22865 56314038 ~ 56314756 (+) True G28654
TU38443 lncRNA upstream 109761 56214451 ~ 56227860 (+) True G28637
TU38439 lncRNA upstream 147338 56190067 ~ 56190283 (+) True G28633
TU38438 lncRNA upstream 147786 56189606 ~ 56189835 (+) True G28632
TU38437 lncRNA upstream 148152 56189253 ~ 56189469 (+) True G28631
TU38534 lncRNA downstream 148555 56602489 ~ 56602883 (+) True G28702
TU38591 lncRNA downstream 241917 56695851 ~ 56697851 (+) False dcaf4
TU38654 lncRNA downstream 366656 56820590 ~ 56823036 (+) True G28776
TU38691 lncRNA downstream 370754 56824688 ~ 56824999 (+) True G28805
TU38693 lncRNA downstream 375687 56829621 ~ 56830017 (+) True G28807
XM_007231520.3 mRNA upstream 25510 56290747 ~ 56312111 (+) True LOC103033217
XM_022663229.1 mRNA upstream 63293 56261636 ~ 56274328 (+) False max
XM_007231518.3 mRNA downstream 32566 56486500 ~ 56635493 (+) True LOC103032052
XM_022663297.1 mRNA downstream 241910 56695844 ~ 56706092 (+) True dcaf4
XM_022663300.1 mRNA downstream 244925 56698859 ~ 56706092 (+) False dcaf4
XM_007231510.3 mRNA downstream 270446 56724380 ~ 56731338 (+) True pigh
XM_007231507.3 mRNA downstream 305772 56759706 ~ 56765799 (+) True vps18
TU38475 other upstream 34411 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 97892 56232739 ~ 56239729 (+) True LOC103029514
TU37650 other upstream 1958315 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 2683891 53653649 ~ 53653730 (+) True trnas-aga_8
trnas-aga_7 other upstream 2684683 53652857 ~ 53652938 (+) True trnas-aga_7
TU38768 other downstream 947991 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1356061 57809995 ~ 57812488 (+) False LOC103042006
TU39139 other downstream 1963460 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 2744268 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 2766598 59220532 ~ 59221036 (+) True G29382

Expression Profile