RNA id: TU38591


Basic Information

Item Value
RNA id TU38591
length 622
lncRNA type sense_over
GC content 0.47
exon number 2
gene id dcaf4
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56695844 ~ 56706092 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGTGTTCGCTGAGCCACACGAGGAAACGCCGCTGTCCGAGGCAGGAAGTACAATACccgtgtgtgtttgtttatgtgaGCGGGTGAAGAAGTTGTTTGGTGGAAAACAGTCACACTCGGGAATAAAACAGCgagttaaagagttaaagtgAGGCTTAAAGTGTGCGGAATCTGTGGAACCAAGCTAAAAAACATGGGCTGCCACGTGTACTACCACTAGCTACGTGGTAGTCGTTTAGGTGCTAGCAGGCTAGCTgactgactagctaacctatctaTCCTATTCaatgtagctaactaagttcGCTAATGCTCAGACGTGCCTTATCCATGTTTCTTCATGGTCAGCGGGCTGGACGTGTGAGCTTGTAGCTGTTCTTACCTCAGTGCCTCTCATTACATATGAATACGAGAAATGGGGAGACGAAATTGGCGAGGAAGGGGAAAACACCAGCTTCACCATCATTATCGTCGAGCAGACTGGAGGAGAGATCATTCCACTGGCAGAAGTCACGAGGATGGCTGGGACAGTACAACAGCGGGGCCTTCTCCCAGAGCAGCAGAGACCAGTTCAGACCAAGACACTGCTTCCTCATCAAGAGCCCCTGCAGCTGCTCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38534 lncRNA upstream 92968 56602489 ~ 56602883 (+) True G28702
TU38474 lncRNA upstream 381095 56314038 ~ 56314756 (+) True G28654
TU38443 lncRNA upstream 467991 56214451 ~ 56227860 (+) True G28637
TU38439 lncRNA upstream 505568 56190067 ~ 56190283 (+) True G28633
TU38438 lncRNA upstream 506016 56189606 ~ 56189835 (+) True G28632
TU38654 lncRNA downstream 122739 56820590 ~ 56823036 (+) True G28776
TU38691 lncRNA downstream 126837 56824688 ~ 56824999 (+) True G28805
TU38693 lncRNA downstream 131770 56829621 ~ 56830017 (+) True G28807
TU38711 lncRNA downstream 312626 57010477 ~ 57010719 (+) True G28822
TU38728 lncRNA downstream 420645 57118496 ~ 57118723 (+) True G28833
XM_007231518.3 mRNA upstream 60358 56486500 ~ 56635493 (+) True LOC103032052
XM_022663274.1 mRNA upstream 241917 56337156 ~ 56453934 (+) False sipa1l1
XM_022663300.1 mRNA downstream 1008 56698859 ~ 56706092 (+) False dcaf4
XM_007231510.3 mRNA downstream 26529 56724380 ~ 56731338 (+) True pigh
XM_007231507.3 mRNA downstream 61855 56759706 ~ 56765799 (+) True vps18
XM_022663335.1 mRNA downstream 69418 56767269 ~ 56819436 (+) False ino80
XM_022663350.1 mRNA downstream 69418 56767269 ~ 56819436 (+) False ino80
TU38502 other upstream 296410 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 392641 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 456122 56232739 ~ 56239729 (+) True LOC103029514
TU37650 other upstream 2316545 54378241 ~ 54379306 (+) True G28072
trnas-aga_8 other upstream 3042121 53653649 ~ 53653730 (+) True trnas-aga_8
TU38768 other downstream 704074 57401925 ~ 57402392 (+) True G28865
TU38889 other downstream 1112144 57809995 ~ 57812488 (+) False LOC103042006
TU39139 other downstream 1719543 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 2500351 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 2522681 59220532 ~ 59221036 (+) True G29382

Expression Profile