RNA id: TU38977


Basic Information

Item Value
RNA id TU38977
length 353
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G29033
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58142873 ~ 58144817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttcctcctcctcctcctcctcagattTGGAACGCTTCTCCTCTTCGTCCTCATTATCCCCTTTCTTCTTCATCACGCCTCGTTTGTGCTCTTGTTCCTCCTTCATGatgtcctcttcctcctcttccccaTTCCTCTTCTCCTGGCTGGAGATTTCATTGCGCTCATGCATCTTCTGCTCTTCCTCTTTACTCTCTTGTTCACTGTCCTCCTCTTcacctctcttcttcttctcttctttctcttctcctgGCCTCTCCATGGCAACCAGCATTGACCAATCTGCAGTCTTTTCTGTCCCCTCAGGGTGGTTGCTTACATGATCAACAGCATCCTTCATTCGCTTCTCCGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38984 lncRNA upstream 14513 58127862 ~ 58128360 (+) True G29040
TU38980 lncRNA upstream 23732 58115985 ~ 58119141 (+) True G29036
TU38971 lncRNA upstream 66343 58060925 ~ 58076530 (+) True G29029
TU38941 lncRNA upstream 231280 57911326 ~ 57911593 (+) True G29003
TU38881 lncRNA upstream 351922 57790251 ~ 57790951 (+) True G28955
TU39028 lncRNA downstream 118381 58263198 ~ 58263581 (+) True G29071
TU39133 lncRNA downstream 252851 58397668 ~ 58398075 (+) True G29150
TU39136 lncRNA downstream 259536 58404353 ~ 58404651 (+) True G29152
TU39140 lncRNA downstream 302087 58446904 ~ 58447361 (+) True G29156
TU39141 lncRNA downstream 303552 58448369 ~ 58448640 (+) True G29157
XM_007258196.3 mRNA upstream 7420 58086509 ~ 58135453 (+) True LOC103039449
XM_015608112.2 mRNA upstream 7420 58086515 ~ 58135453 (+) False LOC103039449
XM_007258194.3 mRNA upstream 62164 58078488 ~ 58080709 (+) True LOC103038833
XM_007258200.3 mRNA upstream 91080 58003247 ~ 58051793 (+) True LOC103040480
XM_007258203.3 mRNA upstream 173991 57920735 ~ 57968882 (+) True LOC103041400
XM_007258183.3 mRNA downstream 102964 58247781 ~ 58261441 (+) True LOC103036000
XM_022663582.1 mRNA downstream 102964 58247781 ~ 58261441 (+) False LOC103036000
XM_022663577.1 mRNA downstream 102964 58247781 ~ 58261441 (+) False LOC103036000
XM_007258180.3 mRNA downstream 137773 58282590 ~ 58317479 (+) True LOC103034955
XM_007258181.3 mRNA downstream 150191 58295008 ~ 58317479 (+) False LOC103034955
TU38889 other upstream 330385 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 740481 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1743432 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1839663 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 1903144 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 272577 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 1053385 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 1075715 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 1083251 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 1083494 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile