RNA id: TU39028


Basic Information

Item Value
RNA id TU39028
length 384
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G29071
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58263198 ~ 58263581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatctatctatctatctatctatctatctatctatctatctatttaaacctttttaatgTGGTATACCatttgtctgtctttgttaaagggcataaaataaagtatttcagcacaAAAGCCCATATCTGTAGTGTGTGACAGTATCATTACTACATCAATGCTgcttgtaacaaaccaaaccgtgtgaaaaTCGGGTAAAatttggtagagttgtgattattataggtgtaaattaatgcactcGGGGCGCAGGGttgcctcctccaatatggcggccAAGTCAGTCGATGAGGAATCTACCTATACAATGACTATGGGATGGAGTAAACTGGGTCAGCGCGCCGCAGCGCCGCCCTGTGGCGGGTCATATTGCAGCTCAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38977 lncRNA upstream 118381 58142873 ~ 58144817 (+) True G29033
TU38984 lncRNA upstream 134838 58127862 ~ 58128360 (+) True G29040
TU38980 lncRNA upstream 144057 58115985 ~ 58119141 (+) True G29036
TU38971 lncRNA upstream 186668 58060925 ~ 58076530 (+) True G29029
TU38941 lncRNA upstream 351605 57911326 ~ 57911593 (+) True G29003
TU39133 lncRNA downstream 134087 58397668 ~ 58398075 (+) True G29150
TU39136 lncRNA downstream 140772 58404353 ~ 58404651 (+) True G29152
TU39140 lncRNA downstream 183323 58446904 ~ 58447361 (+) True G29156
TU39141 lncRNA downstream 184788 58448369 ~ 58448640 (+) True G29157
TU39179 lncRNA downstream 254095 58517676 ~ 58517898 (+) True G29191
XM_007258183.3 mRNA upstream 1757 58247781 ~ 58261441 (+) True LOC103036000
XM_022663582.1 mRNA upstream 1757 58247781 ~ 58261441 (+) False LOC103036000
XM_022663577.1 mRNA upstream 1757 58247781 ~ 58261441 (+) False LOC103036000
XM_007258196.3 mRNA upstream 127745 58086509 ~ 58135453 (+) True LOC103039449
XM_015608112.2 mRNA upstream 127745 58086515 ~ 58135453 (+) False LOC103039449
XM_007258180.3 mRNA downstream 19009 58282590 ~ 58317479 (+) True LOC103034955
XM_007258181.3 mRNA downstream 31427 58295008 ~ 58317479 (+) False LOC103034955
XM_007258179.3 mRNA downstream 57454 58321035 ~ 58385520 (+) False gmds
XM_007258178.3 mRNA downstream 57455 58321036 ~ 58385520 (+) True gmds
XM_022663632.1 mRNA downstream 194373 58457954 ~ 58480787 (+) True exoc2
TU38889 other upstream 450710 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 860806 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 1863757 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 1959988 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 2023469 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 153813 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 934621 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 956951 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 964487 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 964730 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile