RNA id: TU39136


Basic Information

Item Value
RNA id TU39136
length 299
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G29152
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58404353 ~ 58404651 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgtcaagttttagatttaaaaataagggatattttcctctgtccgcttaaagtcgtcccaccagcccaacgaagatTCAGTATCCCTtccattttaagacaggtttacaaaaaatctaaaataaccacatgtgaaccacttacacactacaattagattatcaggaTCTGAAattttgtggacattcctacatatgtcattctttacagccaaattaaaaatcctaaaaatagtattatgagcttttactaaaaggacatggaccacatatattccatcagtaaaaattagtcctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39133 lncRNA upstream 6278 58397668 ~ 58398075 (+) True G29150
TU39028 lncRNA upstream 140772 58263198 ~ 58263581 (+) True G29071
TU38977 lncRNA upstream 259536 58142873 ~ 58144817 (+) True G29033
TU38984 lncRNA upstream 275993 58127862 ~ 58128360 (+) True G29040
TU38980 lncRNA upstream 285212 58115985 ~ 58119141 (+) True G29036
TU39140 lncRNA downstream 42253 58446904 ~ 58447361 (+) True G29156
TU39141 lncRNA downstream 43718 58448369 ~ 58448640 (+) True G29157
TU39179 lncRNA downstream 113025 58517676 ~ 58517898 (+) True G29191
TU39180 lncRNA downstream 115228 58519879 ~ 58520080 (+) True G29192
TU39181 lncRNA downstream 115513 58520164 ~ 58520495 (+) True G29193
XM_007258179.3 mRNA upstream 18833 58321035 ~ 58385520 (+) False gmds
XM_007258178.3 mRNA upstream 18833 58321036 ~ 58385520 (+) True gmds
XM_007258180.3 mRNA upstream 86874 58282590 ~ 58317479 (+) True LOC103034955
XM_007258181.3 mRNA upstream 86874 58295008 ~ 58317479 (+) False LOC103034955
XM_022663577.1 mRNA upstream 142912 58247781 ~ 58261441 (+) False LOC103036000
XM_022663632.1 mRNA downstream 53303 58457954 ~ 58480787 (+) True exoc2
XM_007258170.3 mRNA downstream 100151 58504802 ~ 58508475 (+) True LOC103031977
XM_022663662.1 mRNA downstream 399596 58804247 ~ 58819777 (+) True LOC103021664
XM_007256622.3 mRNA downstream 460949 58865600 ~ 58882191 (+) True LOC103021996
XM_022678389.1 mRNA downstream 492686 58897337 ~ 58908006 (+) True LOC103037011
TU38889 other upstream 591865 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1001961 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2004912 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2101143 56290756 ~ 56303210 (+) False LOC103033217
TU38445 other upstream 2164624 56232739 ~ 56239729 (+) True LOC103029514
TU39139 other downstream 12743 58417394 ~ 58418817 (+) True G29155
trnal-cag_8 other downstream 793551 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 815881 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 823417 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 823660 59228311 ~ 59228562 (+) False LOC111194375

Expression Profile