RNA id: TU39244


Basic Information

Item Value
RNA id TU39244
length 839
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G29251
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58779114 ~ 58779952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACATGTTTCTCCCGTTTCAGGGGCGAACTGCTGCATTCGTTGTACAAACAGATGAGAATATCCAGCAGGGTTTCGACGCTCAGCGAGCTGGCGTTCTTCTGGTGACCATCCAGGAGCAACTGCTCCAACTTCTTCAGGCGAACCTTCGCAGACATTTTCTATCAGCACCACTCCCTCCCTCTAGCCTGGAAAAAACAACCCCGAGCCGGAGTGAACAGGAACAGGGGGCAGAGACCACCCCGCACCGCCGGGCGCAGCGAAACCACTAGTTTCCCGAGTGTCTGTTCGGCCTTTTACTGGAGCTCTGGAGTGCCAGACTCCAACTTGCTAGCTAGCTGCTCAGCTAGCCAGCTAGCAAAACAAGCCCAACATCGGGCTCAGCGTTGCTAAACGAAGCTTCCAGCTAATCGGCCGCCTCGCTAAACCCCCGTCTCACACTCGAGGCCCCGGGGCTCCCATCTGCTCCAGCTCACACTGACGAGGTTCCTGACGGAAAACCCGCACTTTCGGCGGTCAGAAGCCAGTTTTTTAATCCCGTCGAGTCTCACGTTGACCGGACGCCCATTCCCTCAGACTCGGCCCGAAACACAGCTATTATATATCCCGAACAGCCAGCCGTGTCCTCCCTCTCCCTGACCGCAAGCACCACCACCGCCGGCGGCTCCCTCCGCCCGCGCTATACGCAAGTGCGGGTGTGCGCGGACTCTGGGGGCGGCGGTCCTCCTCCGGTCGGCGGCTCTCCGCTGTTAGCCCCAGTGCTAGCCGGTGTGGCTGAGTCTAAAGCCGAATATGGCCGCGCGTGTCCGAGTCCAGGCTGCGCTCGCTCGCGCTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39234 lncRNA upstream 54189 58724628 ~ 58724925 (+) True G29241
XR_002649732.1 lncRNA upstream 56184 58721572 ~ 58722930 (+) True LOC111191935
TU39181 lncRNA upstream 258619 58520164 ~ 58520495 (+) True G29193
TU39180 lncRNA upstream 259034 58519879 ~ 58520080 (+) True G29192
TU39179 lncRNA upstream 261216 58517676 ~ 58517898 (+) True G29191
TU39256 lncRNA downstream 44297 58824249 ~ 58825736 (+) True G29263
TU39260 lncRNA downstream 70025 58849977 ~ 58850430 (+) True G29267
TU39275 lncRNA downstream 80548 58860500 ~ 58860827 (+) True G29276
TU39289 lncRNA downstream 108166 58888118 ~ 58888349 (+) True G29290
XR_002649734.1 lncRNA downstream 108771 58888723 ~ 58895340 (+) True LOC111191936
XM_007258170.3 mRNA upstream 270639 58504802 ~ 58508475 (+) True LOC103031977
XM_022663632.1 mRNA upstream 298327 58457954 ~ 58480787 (+) True exoc2
XM_007258179.3 mRNA upstream 393594 58321035 ~ 58385520 (+) False gmds
XM_007258178.3 mRNA upstream 393594 58321036 ~ 58385520 (+) True gmds
XM_007258181.3 mRNA upstream 461635 58295008 ~ 58317479 (+) False LOC103034955
XM_022663662.1 mRNA downstream 24295 58804247 ~ 58819777 (+) True LOC103021664
XM_007256622.3 mRNA downstream 85648 58865600 ~ 58882191 (+) True LOC103021996
XM_022678389.1 mRNA downstream 117385 58897337 ~ 58908006 (+) True LOC103037011
XM_015607694.2 mRNA downstream 145424 58925376 ~ 58934791 (+) True LOC103022293
XM_022663695.1 mRNA downstream 147048 58927000 ~ 58934791 (+) False LOC103022293
TU39139 other upstream 360297 58417394 ~ 58418817 (+) True G29155
TU38889 other upstream 966626 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1376722 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2379673 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2475904 56290756 ~ 56303210 (+) False LOC103033217
trnal-cag_8 other downstream 418250 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 440580 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 448116 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 448359 59228311 ~ 59228562 (+) False LOC111194375
TU39514 other downstream 774374 59554326 ~ 59559752 (+) False atraid

Expression Profile