RNA id: TU39310


Basic Information

Item Value
RNA id TU39310
length 3013
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G29304
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58976662 ~ 58979697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTTATACTgcacataatatttaataaaacagtcaCAGTCTGTACAGATTACAGAACCATTCTTACATCCCTGTTGGATgatataataaagtatttgttCAAAAAGGCACAATGTCAGGCTTCCAAAAACCAACCAGAAGACGCAACAACAAATGAGTCCTTTCAATTTATAACCACAAAATCAACCATTTCTGCATTCTGGGAGAAGtcagttattttctgtattattgTAAGGCATTTTCTTTTAAGGGCtttcatgaataaaaaatataaaatcgaagtaaagcacattttagttgttttattgtaaaaaagaaataactgatttcttcttcttcaaaaaaaggaaaggctGATATGAGGTTATTCATTGGAAGGGATGAAATGATGAGATACGAGTGACCTGCAGATGAAAAGCAGTAAGATCTCCATCAACCAACAAACTGGCTTCGTCAGATTTCCAAATACTTCAGGTTTATAGCCAAAggcaagcaaacaaacaaacaaaccaaaaaagacGACGAAGCTACATACCCTACCGGCTGCAATtcacataaaacaataaatgggTAATCACAACCAGAAatagttgtttaaaaaaaaaagtgtttaaaaaaatgttatgcaataaaaataaaaattagcgTAACATACATTAAACAGTTAACATAAGGCTGGAAATAAAAGAACTTGGTAGATCAAATTTCAAGTTGGGCTAAAACAGGACAGAAAAACGACACTGACAGTCAAATCATTATGTTCCAAGACACAGGAAACCATTGATCCACATGAAGTCTAAATGAGACTTCCCACAGGGACTATGGGAAAGCTACTCGGTCAGACGTTTAGCTCTTCGATCCAGGCAGACgctgcttttttttgttagtttaaatGACCTGAAACCAGCACATTCACTTCCATCCTCAAAATACAGATCAACCCACAGCCCGGTTTACCACCCTAACGTATATACTGCTCATTTTTAGGGGCCAGACCACTGCTACTAAATGTAAGAACAAATACTGTGGCCCCATTTTAATGTAATCGATAACTTACCCTCGTCAAGATCAACTCGCTCTTGGATATGCATCATACCCATGTTACATAAGTGGCGGCTTACAGAACAACGGAAGGAGACAACGAGCAGTAGAATTTTCTATTGCAACACAGCCATGCTTCTGAGATTAGATCAGAGGgctaatacaataaaaacatttactgtaaagtTCAGGCATGATGTACTTTATATttgtgaataaatcattttaaattggtTTAAAGTAGTAGTGGCTGTGCACTATAGAAAGGGACGTTTGCACAACAAAATGCAGAAATCTTAAACTGTACTGTCATTCCCTTTGACTTCTTGGTGAAAAATAACTGAATGAATGATTCCTTCTCTAGATATCAaaacactgaatcatttctaataCTCATTACAGATTTTTTAGCTTTGCCTTTCCTCAGCATTTGTAGATTCACAGCTTCTAAAAATATTGCAAACACAGACCTTGTTTGCCAGTCCTGTAATGCTCcaatgcacattttagtgttttccttGTTACCAAAACATCTGCCTtaactagggatgcactgaatatctTGTAATAAAATTAACCAAAATTAGTAAAAGACTGAATAATCTATATCAAACAACaacttgtttgttttaagtcatttttctgtgttttctctaaCGAACAAACAGATGCCCACAGTCCAACCTCACCCTCTCCCCAGCAGCGACACAGAGTGCTGCTTTATACGAAGCAAGGAGTGAGGGACACATGGagcacacaaaaaagaaaaatgtaataaagcaTTCGGTATTACATATCACACTTAACATCAGTTTACTCTCTCTTTaaaaaactgtctgttttcagaTGAAAGACAAAGATACAAGCTGTGAAAGTGATAAAAGCTGAATTAACTAAGACTtggcatttgtttgtttaccaaaagactggCTGTATTTCAATTTACTCAGATGCACTAccgaggtaaatgtatgattagaacggcactgctgaagtacattcatgattaaaaattgcagtgctgaggtaaatatactGATTGTGTTTATTGGTATGTCTGCTGGGATATTAAAAAGCTTAAGCATATTAATATTCTAATGGTAGTTTTGTAACTGCcttttctttgaaaagcaagatAAAAATGCATGTAGGCAATTTAATTTATTCGATGGTGAAAAATGTTTGGTATTTGGCCAAACTACATTGAGCTCAGCTTTTAACAAAAATGGTAATTTCGGTGCATCTCTAGCCTCAACTTATAAGCTAAATATCAAGCCCTTAATAAAGTTACAAAAGTATGTTCACAGAATAATGCTCTGCACACAGCTAATTCAGgaagagtacacacacacagacacaaaaaaagagaaatgaaaagGCTGGTTTTAGAtcagtagataaaaaaaagcaacGTCCGATAACTGATAGCAGATACTGccaataaacacagaaaaagtTAACTGCGCCGTGCACAGTTACAGAGAGTCGCCTTGCATTTCAAGTGTCTCGAGGAGAACCATCATCCAATCTGAATGACAGCAATGTGGTCACACCCACGAGCCTAGGTGGCAAAGTATCCACATTCCAGCATTATTTGACTGATAGTGACATGGACCAGTAGACCATGTGACagtcagtatacagtatatatagatAAAGTGGTGACTTCTCCAGCCCTTAAAGTTTGTCAGGGTGACACCCCGTCCTGGTCCATACTGCACCCTAGTGCCTCAATGTCATTGCTGATGTCAGAGATCATGCGGTCCCACTCGTCACCCTCTGAgggtgatgttccttcatctGAGCCACCTGCTGCCCCATTGCCGTTAGTGGTGGAGTCTGAGGCGGAGCTGGCAGTGCGTCTGTAGCGCCCAAAGCTGTCGGTGATGATGCCACGGCCATCCTTCACGCCAATGGTTTCGAGGAAGTTCTCGAAGTGCTGGCTGTCCTTCTCTGGAATGAAGGGCCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39299 lncRNA upstream 28082 58935011 ~ 58948580 (+) True G29299
XR_002649734.1 lncRNA upstream 81322 58888723 ~ 58895340 (+) True LOC111191936
TU39289 lncRNA upstream 88313 58888118 ~ 58888349 (+) True G29290
TU39275 lncRNA upstream 115835 58860500 ~ 58860827 (+) True G29276
TU39260 lncRNA upstream 126232 58849977 ~ 58850430 (+) True G29267
TU39324 lncRNA downstream 84776 59064473 ~ 59112299 (+) False mtmr9
TU39325 lncRNA downstream 84776 59064473 ~ 59112299 (+) False mtmr9
TU39408 lncRNA downstream 239879 59219576 ~ 59219829 (+) True G29383
TU39423 lncRNA downstream 256799 59236496 ~ 59243834 (+) True G29388
TU39424 lncRNA downstream 256799 59236496 ~ 59243834 (+) False G29388
XM_007256625.3 mRNA upstream 12999 58954101 ~ 58963663 (+) True LOC103022804
XM_015607694.2 mRNA upstream 41871 58925376 ~ 58934791 (+) True LOC103022293
XM_022663695.1 mRNA upstream 41871 58927000 ~ 58934791 (+) False LOC103022293
XM_022663697.1 mRNA upstream 41871 58927040 ~ 58934791 (+) False LOC103022293
XM_022678389.1 mRNA upstream 68656 58897337 ~ 58908006 (+) True LOC103037011
XM_007256630.3 mRNA downstream 112743 59092440 ~ 59112315 (+) True mtmr9
XM_007256631.3 mRNA downstream 135742 59115439 ~ 59123577 (+) True LOC103024478
XM_007256633.3 mRNA downstream 159883 59139580 ~ 59168498 (+) True pinx1
XM_007256634.3 mRNA downstream 200948 59180645 ~ 59184033 (+) True sox7
XM_022678400.1 mRNA downstream 241569 59221266 ~ 59228840 (+) True LOC111194375
TU39139 other upstream 557845 58417394 ~ 58418817 (+) True G29155
TU38889 other upstream 1164174 57809995 ~ 57812488 (+) False LOC103042006
TU38768 other upstream 1574270 57401925 ~ 57402392 (+) True G28865
TU38502 other upstream 2577221 56337180 ~ 56399441 (+) False sipa1l1
TU38475 other upstream 2673452 56290756 ~ 56303210 (+) False LOC103033217
trnal-cag_8 other downstream 218505 59198202 ~ 59198284 (+) True trnal-cag_8
TU39407 other downstream 240835 59220532 ~ 59221036 (+) True G29382
TU39412 other downstream 248371 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other downstream 248614 59228311 ~ 59228562 (+) False LOC111194375
TU39514 other downstream 574629 59554326 ~ 59559752 (+) False atraid

Expression Profile