RNA id: TU39454


Basic Information

Item Value
RNA id TU39454
length 259
lncRNA type intronic
GC content 0.48
exon number 2
gene id G29409
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59312602 ~ 59312912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTGTCAGCCCTGAGGCTCCACCCATACCCTCTCAGCAGCGCTCGACGTCGCCAGAGTTCTGATCACCGGCCCACCCTTCCAGCTGATCATCATCAGCTGGGGTATTTAAGTGACTCAATCTTCAAACCCAGTGCGAAGTCTTAGTTGCCATATCGTTTCTAAGTTCTGAGCGTTtctatagatatatgtttaatCGTTACTGACCTCTGCCTGTATTTGGATTTGTTTATTGTGGTAATAAACTGTCTGCACTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39448 lncRNA upstream 35765 59276607 ~ 59276837 (+) True G29405
TU39423 lncRNA upstream 68768 59236496 ~ 59243834 (+) True G29388
TU39424 lncRNA upstream 68768 59236496 ~ 59243834 (+) False G29388
TU39408 lncRNA upstream 92773 59219576 ~ 59219829 (+) True G29383
TU39324 lncRNA upstream 200303 59064473 ~ 59112299 (+) False mtmr9
TU39479 lncRNA downstream 123248 59436160 ~ 59436375 (+) True G29432
TU39501 lncRNA downstream 194096 59507008 ~ 59519972 (+) True G29448
TU39591 lncRNA downstream 318792 59631704 ~ 59631907 (+) True G29515
TU39592 lncRNA downstream 319207 59632119 ~ 59632468 (+) True G29516
TU39604 lncRNA downstream 387151 59700063 ~ 59704110 (+) True G29526
XM_022663760.1 mRNA upstream 37068 59251973 ~ 59275534 (+) False LOC103025639
XM_022663751.1 mRNA upstream 37068 59263068 ~ 59275534 (+) True LOC103025639
XM_007256637.3 mRNA upstream 37068 59263068 ~ 59275534 (+) False LOC103025639
XM_007256635.3 mRNA upstream 37068 59263068 ~ 59275534 (+) False LOC103025639
XM_022678409.1 mRNA upstream 69202 59239996 ~ 59243400 (+) True LOC111194377
XM_007256652.3 mRNA downstream 175249 59488161 ~ 59503522 (+) True LOC103030186
XM_007256648.3 mRNA downstream 241373 59554285 ~ 59559762 (+) True atraid
XM_015607684.2 mRNA downstream 273797 59586709 ~ 59598332 (+) True nme6
XM_007256655.3 mRNA downstream 440564 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA downstream 440564 59753476 ~ 59765073 (+) False LOC103031439
TU39412 other upstream 83903 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 84040 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 91566 59220532 ~ 59221036 (+) True G29382
trnal-cag_8 other upstream 114318 59198202 ~ 59198284 (+) True trnal-cag_8
TU39139 other upstream 893785 58417394 ~ 58418817 (+) True G29155
TU39514 other downstream 241414 59554326 ~ 59559752 (+) False atraid
TU39573 other downstream 278077 59590989 ~ 59598241 (+) False nme6
XR_002649037.1 other downstream 1117949 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 2380301 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 2383888 61696800 ~ 61696871 (+) True trnad-guc_1

Expression Profile