RNA id: TU39501


Basic Information

Item Value
RNA id TU39501
length 2992
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G29448
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59507008 ~ 59519972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATGGTCAGATTTCTGTGTTTAGCAGTGACTCTGTGCTGGAGCTAGATGGAGCTAATCAATCATCCTCCTAATGATTTTACAATAACCTTACCAGCAGAAAAAACataggaaaaaagaaaacataccaAATCAAAAAGCAGACCCGCCTTCAATCATGTCTATCATGCATCACATCACAATTGCAATttccccaacacacacaaaaaataaataaataaatctagaGTCACATTATTTGGCACCTAAATTTATTGAAATCCAGGACTCAGCATTGTGCAGCTTTGATTCGTTGTTCATAAATTTAACATGGAGATGAAGATAAAAGCACATCATTTCTAGATAAGCTGGTGGGCATAGTGAAGTCGACAATCATATAATAATACAGACATAAATGAAACCATCAGCCACCTGTTGACCAGAACAATAACACACTCTTCTTCCACCACATCCAGCCAGACAGGTTTTCCAGGAATATAAACCCAATCAGGATTCTGTTTACAGTCTCTGGATAAGCAAGAATCACACTGAAGACCGTGTCTCTGGAATGAAGGCCATTCAACGAAAGAAAAACAATGGCCATTTTGCTCGGATTGACATTGCTAGCGTGAGATTTCAAATGTAGCCATTTTCCAAGCACCGTTTTCACACAGTCCCAGTACATGATTGCCACAATGTatttgataaaatacaaaatggaTATTAAAAAAGCATGATGTTCTCCAAAAAATAAAGGCATGGTGAGTAAAAGACATAAATCAATGAAAATTCAGATATTGAATTTgtaaacacttttttctttcaatttctACTCACAATTTTCTACAATTTTGTAAACAGTGATAAATGCTAGTTTCTTTTTTACACAGCTTAGATTATATATTTGATCTACTGTATATGATTATAATACACTAATGATAATACATATTAGTAAAATGCtcagaatacttttttttaattgcatgtACATTTATAAAAGTGACAATAAcatgattttaaatgtatttttgtgcaaaatgctTTAGTAAACTATAATTTTGGCATTTATGAGAAACCTTTCACaaaatattggttggggaaagtaaagaaaaaacaaacgaacaaacaaaacaaacaaaaaaagaaaacaggaaaaaatgatcaaatgacACCCAAACCACTTCTACATGTTTGAGAATGTGTTCTCCATGGTTAAGATGTTAAGATTTCAATAAATATCAAATCATGCCATCTGTCCTCCCTAATACTGTGCAAAACCATGGGTTTAACATGTGCAAGCAGTTCTGCCAAACCACCAACAAAACTCCAGTAAATTCTGCAAGATTTCTGTCCAGAGCTTCCACTGGCTAGGACCCCAACACTGACACGGCTCTGAGCCAATGGCTTCCAAATGCTGGCTGTGTGATTCAAACTGCTAGACAAGCTGATCCTAAAATGTAAGGCGGCTGAGTAACTGTAAGGCAAACAGGAAAAAGCAGGCCACTCTATTACTGTGACTGAATTAATGAAGCATGATCTATGTAGGATGAGCAGGTCTCCATTAATCTAGAACCTGTATCAAGACTTCTGATCAATACACAGATGATAGTGATGATCCTGATGTGATAACAAAATGTTCTGAAGGCATTGAGAACTCCGAGCATTAACGACAAGACAAAAGACAAacagaacaggaaaaaaaaaaaaaaaagaaaaaatggcaAGAATTGGCACACTGCACGTACTGAAGGCAGCAGTTTCCCCTGAACTTTTCCCTGGTTTTGCTTCTCCTACTTTTACAGCATACTGGTAACTGCAGTTATAAGAGCCATGGCCATTAAGACCTCTGTTTCGAGTTAACGTTTAGGCTacgttttacagttttacagttcgAATCTGCTAATGTTGGCACATTTCGCACTGATCTGTGTTCTCCAAACTACAATAAGCTATCATTGCAGTCATCAGCTTGAGATAAGGAGGTCTGAACTTCATGTAATGCCGAGCCATTTGGTAACACAGAAACAGGATGAGAAAGCACAGCATTGAGTCTCTAATAAGAAAAAGTACTACTTAGTGCTGGAGGTTAACGTCAGCAGCAACCTTCATCACAGCCAATAAATACGTCTCTGTCCTGGATGCAATCACTAGATCCAaatcaactaaataaagcaacAGGAATGCTTAAAGATTTGTTTTTAACTGAACAGAAGTACAGTATTTGTGTCACAGATGGTCAAATTGGTCAATTTATTATGCATGATTTGTGGCAaggattagggctgcacaatgtaTCATCACATTGTCAATCATTAGCATTAGATTTGCATTATTGATACTGCAGAAGTGTGCAGTGCACAATATGGAAATGAGCATCAAACCTATAGCTGTTTTTTGTGCACTGGGAGCATACTGAACAATCAATCCCATGACCAATGTCCTTTTTGGGGATTCCATGAATTGAGGCAttcatatgatttaaaaaatctaatattttgGGTTGGAAATTAGCATAGATATTGTTTTTACAAAAGCCCcttccggacaggattagtttgtGGGGGTCTTGtggtaattttttcttttattcctcTGTGAATTTATTCACGTCCGGAACAAccatgcatgtttttttctcagacgtccttcACTGAACTATGTGGTCCCCCAGTAATTTTATAACTGTCTGGATcgacatctctgagtttcgtctcctcacgtttaataaaatagctatttgtccactccTACACACCGTAATTCCACTTTGGGTGCGTGTTCCCATGGaaatccatgtaaacacaacagcgagtggaaatggaggagctactgaacgaggtcatgtgaccgagaaagccaaaaaaaaactcactagtGCTcccgtttttttaatttttaaattagtgttagtgtgtttgtatttatatatgatttttcattATAGCAAATGAGCATGTTTTACATAGAAGTAAGAACTTTTATATAGTGTTGTCTTAAGTGGAGAAATTAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39479 lncRNA upstream 70633 59436160 ~ 59436375 (+) True G29432
TU39454 lncRNA upstream 194096 59312602 ~ 59312912 (+) True G29409
TU39448 lncRNA upstream 230171 59276607 ~ 59276837 (+) True G29405
TU39423 lncRNA upstream 263174 59236496 ~ 59243834 (+) True G29388
TU39424 lncRNA upstream 263174 59236496 ~ 59243834 (+) False G29388
TU39591 lncRNA downstream 111732 59631704 ~ 59631907 (+) True G29515
TU39592 lncRNA downstream 112147 59632119 ~ 59632468 (+) True G29516
TU39604 lncRNA downstream 180091 59700063 ~ 59704110 (+) True G29526
TU39641 lncRNA downstream 332099 59852071 ~ 59852524 (+) True G29558
TU39643 lncRNA downstream 337269 59857241 ~ 59857582 (+) True G29560
XM_007256652.3 mRNA upstream 3486 59488161 ~ 59503522 (+) True LOC103030186
XM_007256639.3 mRNA upstream 153883 59297681 ~ 59353125 (+) True fndc4
XM_022663760.1 mRNA upstream 231474 59251973 ~ 59275534 (+) False LOC103025639
XM_007256648.3 mRNA downstream 34313 59554285 ~ 59559762 (+) True atraid
XM_015607684.2 mRNA downstream 66737 59586709 ~ 59598332 (+) True nme6
XM_007256655.3 mRNA downstream 233504 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA downstream 233504 59753476 ~ 59765073 (+) False LOC103031439
XM_007256654.3 mRNA downstream 247410 59767382 ~ 59786661 (+) True LOC103031133
TU39412 other upstream 278309 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 278446 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 285972 59220532 ~ 59221036 (+) True G29382
trnal-cag_8 other upstream 308724 59198202 ~ 59198284 (+) True trnal-cag_8
TU39139 other upstream 1088191 58417394 ~ 58418817 (+) True G29155
TU39514 other downstream 34354 59554326 ~ 59559752 (+) False atraid
TU39573 other downstream 71017 59590989 ~ 59598241 (+) False nme6
XR_002649037.1 other downstream 910889 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 2173241 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 2176828 61696800 ~ 61696871 (+) True trnad-guc_1

Expression Profile