RNA id: XM_007256648.3


Basic Information

Item Value
RNA id XM_007256648.3
length 1574
RNA type mRNA
GC content 0.38
exon number 7
gene id atraid
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59554285 ~ 59559762 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCACGGGGTGCATCACAAAGTCATGTGACTGGAAAGATGCCTGCTGGGGTCAGCGCTTCTACTCTGTccgctgtttatttattttatatatttctcattctctccGGTGTCTACGTCTATTCTCAGCAGAGCGAGCCGCAGtTTTGTCGGTTGTGTGATGGAGTGGTGCAGAGCGGCAGTGCTGTGTGGAGCGCGTGCCTCTCAGCAGGCCGAATAGAAGGGCGATGCTGCAttaggaacagcagcagcagcagcagcgctgatgataatggtgatgatgaggACAGCATTTTCGGGTTGGATTTCTCAAACTGTTCTCTGAGTCGTTTGGATGACCTCAGTGAGGCATCAGCAGCATTTATAATcgaTCTTTCCAACAACCCTCTTTCCAATCTGAGTGATTTTGTATTTCAGGGATTTAATCAGTTGGGTCATCTTATAATGCCCATAAAGCTGGAGTGTCCAGGAGGCAACACATCATGGGATAAAGTGGAGGTTAAAGGGAATACTCGGCTCTGTGAAGGACAGAAGAATGCCTGCAATCAGACAGGAATGTCTTGGGACTGTCCTGAGAACTCTCTCTGCATGCCTTACGGACCAGGATTCTTTGAGTGTACCTGTGCTCAGAACTTTCATGGGTATAAATGCCTGAGAGAGGGCCAGTTTCCCATGATGGAGGTCATGGCAATATTGGGTGGATCCACAGTTGTCATTTCGGCATTATTATGGGTAACCCAAAGAAGAAAAGCCAAAGGCATCTGAATTCTGGCTTCTTGACTGTCAAAACGATGGTAGAGAACACTGTACAAAACACAAACTGACAGAAAACTGACTGCATTGAATGACAAGTTTaccattttaaacatactttttttattttatttattttttattattatttgaaacaGTACTtctgaagatttttttaaaataaaaagcagtttttttttactgagcaATGAATTATGCTGGGAAGTgcaatagtatttttttttaagccgtCCCAGAAATAAATGTTACAACTGACAATTTACTTGGCCTTTCAAAGCTGTATGTTGATTAATCTACACTGAAAAGAAGCTATAATCTGATTGTGGGTTTATACTGAACTCTAAATCAGTGTAGCCTCTGCAGTATTGGCCAGGGGTTTGACTGcacatatctatatatatttagttttgcaCACAATTATTTGttcaattattatttgtttgcaCATGCATACACTTAtattgtacttgttttctaaaatgtacatatataatatataatgtgtataaataaacatgtataaacTATAATATGTTTACAGTTCAGGGAGAGTCATTTGATGACCAGTGTTTAAGTACTATCTCAAATTTAGCATCAGACTGTTGGTTATATAGTAGACATAGtaaagatttaaaaagtaaaaatgcattaaaagacTAATAATCATGTATGCAGTGTGGTAAGCAACTACCTTTAAGTATTGGTCCTCATTGGTGGTAGCTGTTTACTACGTCCATTTCAAAATGAACTTATCTAAAATCATGTATAAAAGTattttgaaataaatgataccaaGAATGa

Function

GO:

id name namespace
GO:0033689 negative regulation of osteoblast proliferation biological_process
GO:0030501 positive regulation of bone mineralization biological_process
GO:0010468 regulation of gene expression biological_process
GO:0045669 positive regulation of osteoblast differentiation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39501 lncRNA upstream 34313 59507008 ~ 59519972 (+) True G29448
TU39479 lncRNA upstream 117910 59436160 ~ 59436375 (+) True G29432
TU39454 lncRNA upstream 241373 59312602 ~ 59312912 (+) True G29409
TU39448 lncRNA upstream 277448 59276607 ~ 59276837 (+) True G29405
TU39423 lncRNA upstream 310451 59236496 ~ 59243834 (+) True G29388
TU39591 lncRNA downstream 71942 59631704 ~ 59631907 (+) True G29515
TU39592 lncRNA downstream 72357 59632119 ~ 59632468 (+) True G29516
TU39604 lncRNA downstream 140301 59700063 ~ 59704110 (+) True G29526
TU39641 lncRNA downstream 292309 59852071 ~ 59852524 (+) True G29558
TU39643 lncRNA downstream 297479 59857241 ~ 59857582 (+) True G29560
XM_007256652.3 mRNA upstream 50763 59488161 ~ 59503522 (+) True LOC103030186
XM_007256639.3 mRNA upstream 201160 59297681 ~ 59353125 (+) True fndc4
XM_022663760.1 mRNA upstream 278751 59251973 ~ 59275534 (+) False LOC103025639
XM_015607684.2 mRNA downstream 26947 59586709 ~ 59598332 (+) True nme6
XM_007256655.3 mRNA downstream 193714 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA downstream 193714 59753476 ~ 59765073 (+) False LOC103031439
XM_007256654.3 mRNA downstream 207620 59767382 ~ 59786661 (+) True LOC103031133
XM_007256658.3 mRNA downstream 501336 60061098 ~ 60091808 (+) True rhoj
TU39412 other upstream 325586 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 325723 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 333249 59220532 ~ 59221036 (+) True G29382
trnal-cag_8 other upstream 356001 59198202 ~ 59198284 (+) True trnal-cag_8
TU39139 other upstream 1135468 58417394 ~ 58418817 (+) True G29155
TU39573 other downstream 31227 59590989 ~ 59598241 (+) False nme6
XR_002649037.1 other downstream 871099 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 2133451 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 2137038 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 2366344 61926106 ~ 61936083 (+) True LOC103046322

Expression Profile