RNA id: XM_015607684.2


Basic Information

Item Value
RNA id XM_015607684.2
length 1431
RNA type mRNA
GC content 0.44
exon number 5
gene id nme6
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59586709 ~ 59598332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAACCCGCTTGTTTTCGGAAAAGCAAAATGGCAGCGCTCATACACGCTAGAGAGTGTACTCTGACAGAGAGCGAATGAAACGAGCCACAGTTGATCAGCAGGTTTATAGTCTTTAGTTACTGTAAATGTATATCAGGAGCGATAGAGAGCTCTTCAGCTTTAGGGGCGGTaaagtagagtacagtacagtacagtagagcaGGTTATATTGAGGAGGGCAGGTTAACTCGGCTTTAATGCGGACAGTGCTGAACAGCAGCTGAACAGCTAAATAAACTCACCGAGCCCGCAGTGAGAGAGTCACAGAGCTCCggtagaggagaggagagagagcggGGTTCAGCGGGGTTCAGAGTAAATCTGGGGGTAATGCTGTTGAGCTCACTGAGGAGAGCGAGGGTCCTACAGCTCACCCTTGCGGTCATCAAACCGGACGCTGTAGCTCATCCGCTCATACTGGAGGCTCTTCATCAGAGAATCCTAGAAAACGACTTCCTCATTGTCAGAAAAAAAGATCTGATATGGAGAATAGGAGATTCTGAAAGGTTTTACGCAGAACATGAAGGACGGTTCTTCTACCAGCGACTTGTTGAATTCATGTCAAGTGGTCCAATGAGAGCTTATATCTTGGCCAGAGAGGATGCGATCACTCGCTGGAGGGAATTGATGGGTCCTACTAAAGTGTATCGGGCTCGGTACACTTCGCCGAGCACCATCCGGGCACAGTATGGGCTCACGGACACCAGAAACACCACTCATGGTTCAGATTCGGAGGAGTCAGCCAAGAGAGAGATTGCCTTCTTCTTTCCGGAATTCAGTGCTGAGCAGtggctggaggaggaggagccgtGTTTTCGGGCAGGACACGCAGAATACGATCAGCACGGGCAAATCCATATGCCACTCAAACACGTCTGACCATCCATCTGCCTTCACCAAAGACTGGACTCATGCCCTTAAAAATTGAAAGCACTGCTTGTACTTGAATGATGTGTCTTTGTCTTGTCACATTGCTGTGGTGTGATCTCAGATCTCAGACCTGAATATTTATGTGAGCACTTGCACACTTGTACTGTTGTGCCAAAATAGAAGGTCCacattaaatatgttattttattcagtgtaaGATACAGCAGTACGGGATTTTGTGTTGATATTCAGTAGGCCTGAGTTTTAAAAAGGACTTGGCAATACGATATGTACCACGATACAGGGGTTTAGattcaaaatatcacaataaattgtGATATTATAACCAAGGAAATTTGATGTAAttgtttaaatcagattttaggaAAACCATCATAATATAAGAACACAATgtcatattaataaaatgtgagacaaaaaatgtggttttatgcattaataataacaattaaccACTTTCTGTCACCAAAAATAAACTATGTAGTATTCCAAAACAAAA

Function

GO: NA

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39501 lncRNA upstream 66737 59507008 ~ 59519972 (+) True G29448
TU39479 lncRNA upstream 150334 59436160 ~ 59436375 (+) True G29432
TU39454 lncRNA upstream 273797 59312602 ~ 59312912 (+) True G29409
TU39448 lncRNA upstream 309872 59276607 ~ 59276837 (+) True G29405
TU39424 lncRNA upstream 342875 59236496 ~ 59243834 (+) False G29388
TU39591 lncRNA downstream 33372 59631704 ~ 59631907 (+) True G29515
TU39592 lncRNA downstream 33787 59632119 ~ 59632468 (+) True G29516
TU39604 lncRNA downstream 101731 59700063 ~ 59704110 (+) True G29526
TU39641 lncRNA downstream 253739 59852071 ~ 59852524 (+) True G29558
TU39643 lncRNA downstream 258909 59857241 ~ 59857582 (+) True G29560
XM_007256648.3 mRNA upstream 26947 59554285 ~ 59559762 (+) True atraid
XM_007256652.3 mRNA upstream 83187 59488161 ~ 59503522 (+) True LOC103030186
XM_007256639.3 mRNA upstream 233584 59297681 ~ 59353125 (+) True fndc4
XM_022663751.1 mRNA upstream 311175 59263068 ~ 59275534 (+) True LOC103025639
XM_007256655.3 mRNA downstream 155144 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA downstream 155144 59753476 ~ 59765073 (+) False LOC103031439
XM_007256654.3 mRNA downstream 169050 59767382 ~ 59786661 (+) True LOC103031133
XM_007256658.3 mRNA downstream 462766 60061098 ~ 60091808 (+) True rhoj
XM_007256666.3 mRNA downstream 667505 60265837 ~ 60273289 (+) True LOC103035162
TU39514 other upstream 26957 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 358010 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 358147 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 365673 59220532 ~ 59221036 (+) True G29382
trnal-cag_8 other upstream 388425 59198202 ~ 59198284 (+) True trnal-cag_8
XR_002649037.1 other downstream 832529 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 2094881 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 2098468 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 2327774 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 3240903 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile