RNA id: TU39592


Basic Information

Item Value
RNA id TU39592
length 350
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G29516
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59632119 ~ 59632468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTGGTTTAGCCCGGGGGGTATTTAAGGGGTATAGGGTGAGCATTACGGGAGGAGAGGTAGATTGAGTTCTCTGAGACGGACATGTTTGCTGGAGCTAAAAAGCTTAAGAACTCTATTAAGGACTGGGCTAGCGTTCTTACCCGTAAGTCTTAACTAGTGGTAGCATTATCCACTTATCTCTGCCTACTCCTAAAAataagtgtatatagtgtgttgtattcttttttgtttttttttgtcaataaacTGTTATAGCTGAACAGTTTACAACTGCTCCAAGCGCCTCCTTTGCCTTTACGACGCTATTCGACAGCGGTACCTCCTGACCACACCACCCACACTACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39591 lncRNA upstream 212 59631704 ~ 59631907 (+) True G29515
TU39501 lncRNA upstream 112147 59507008 ~ 59519972 (+) True G29448
TU39479 lncRNA upstream 195744 59436160 ~ 59436375 (+) True G29432
TU39454 lncRNA upstream 319207 59312602 ~ 59312912 (+) True G29409
TU39448 lncRNA upstream 355282 59276607 ~ 59276837 (+) True G29405
TU39604 lncRNA downstream 67595 59700063 ~ 59704110 (+) True G29526
TU39641 lncRNA downstream 219603 59852071 ~ 59852524 (+) True G29558
TU39643 lncRNA downstream 224773 59857241 ~ 59857582 (+) True G29560
TU39651 lncRNA downstream 255388 59887856 ~ 59985113 (+) True G29567
TU39665 lncRNA downstream 463687 60096155 ~ 60097909 (+) True G29580
XM_015607684.2 mRNA upstream 33787 59586709 ~ 59598332 (+) True nme6
XM_007256648.3 mRNA upstream 72357 59554285 ~ 59559762 (+) True atraid
XM_007256652.3 mRNA upstream 128597 59488161 ~ 59503522 (+) True LOC103030186
XM_007256639.3 mRNA upstream 278994 59297681 ~ 59353125 (+) True fndc4
XM_007256635.3 mRNA upstream 356585 59263068 ~ 59275534 (+) False LOC103025639
XM_007256655.3 mRNA downstream 121008 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA downstream 121008 59753476 ~ 59765073 (+) False LOC103031439
XM_007256654.3 mRNA downstream 134914 59767382 ~ 59786661 (+) True LOC103031133
XM_007256658.3 mRNA downstream 428630 60061098 ~ 60091808 (+) True rhoj
XM_007256666.3 mRNA downstream 633369 60265837 ~ 60273289 (+) True LOC103035162
TU39573 other upstream 33878 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 72367 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 403420 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 403557 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 411083 59220532 ~ 59221036 (+) True G29382
XR_002649037.1 other downstream 798393 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 2060745 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 2064332 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 2293638 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 3206767 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile