RNA id: TU39665


Basic Information

Item Value
RNA id TU39665
length 1717
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G29580
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60096155 ~ 60097909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtctttttaaaataattagattTATTCTATTCATCAAACcctttcttttgattttttttctaacataAACTTAGTTGGGCCAtcataaaacacacaatatgcatgaaagaggaggagggagggTAGAGAggtcaaaagagagagagagagagagagagagaaaatgagagagagagtgagagtgtgtgtgtgagagagatatcAAGCCaaacaaatgaagaaaaaataaaatacatcttCCTCATGTGTAAAATCCACACCCATGACTTGGAtttgaaataaaacagaataaaacaaaaaacaagagtCCTGTGAACACAACAAATGATCTAACTCGAAGTGCTTTAGTCCCAACCCACCACTGCAGctggtatttatttttattgaggaATAAGACTTACTGGATCCGCATTTTTATTCCCAAATGGGCCTTAAAATTACCCCACAAACGCCGGCTGTCATTCCGAACACTCCTGTAAAAGTCATCTAAGCTCTAGTCAATCGTTTCAAGGGCATCCGACTGTCCTGCCCTTCAAAACGGACCGAAGATAAGAGCAGTAGACAGTAGAGCTGCTCATGGCTAAAATGTCCAGAGTAAGAGGTTAAAAGAAggttaaaaaacacactgaagaaGTTCTGAACACTGCGCCACGAGAAAAGAAGAACAGTTCTTGACCGTCTAAAGTCATACTGAAAATGAAGCTAGGCTGAAGTTTCCAAGAGGTCTCCAGAGAAACACAGCACACAGCTGCTCACAAAAAAAGCAGGCTTTCATGACCTGTTTCAcacgtttaaaaaaatacttcaggGAGATAAAGGTTATGGCAACCTCTGTAGCCTACTGCTGCCCGTTGAAATTATGAAGCGATTCCTGTTTGACGGTACCAGTGCCAGACTGGCACCTGCCCTGTACAACAATAGAACTGGGATAATCACATTCCTGACATTCTTGAAAATAGTCTTCTTGAATTTCAGTGTTCCTTTTTCTCATCTGAGTGATTGTTTTGATACTCTGGTACAGTAGCCGCACTCGGAGGTGTCGATATATAAACGTAGTTGTGATCATATGTGATCAAGTCTTTCTTTGAtgaggtgaagaaaaaaaatgagacaaaaaaaaaaaaaaaaaaaaaagaacgtgGGACGGACAAGGGCAGCCTCACAAGAGTGCATGATATCTCTTCGATTATGAGGATGCTTTGGGACCACACTCTTTTGAAACATGATGAAATGAGGCTCCTTTTCTGAAGCAAAGGGTTTTCCAAAAATATCCTTTCACCATAGatgattatcttttttttttcttctttgttttttttttttcttttatcgtGTAGAGTGTACACAGAGTCTTTTCTCCCCTAAGGTAGATACagctccttttcttttttattgtctatTGTTTCAGTGTAGTATCATTGTAAAGGAAACAGGTtgaaagggatttttttttttttttgaggaaagggggaaaaaagaaaaaaggacaggacAGACAAACGCAGGAGTGTACAGTAATTCATGTAGCACAAGAAGCATGGAGGGGGGGTGGTGTCCCTGTGGCAGAAAAAAAGGGCCATTGGTTGGAGGGGTGGAGTTAGACATCCATGTTAGGTGGGAATGATGCCATCGCTGTTTTGGATGCCCCGCCTCAGCTCCAACTCTTCCAGCTTCCGCCACAAGTCCTCGCGatccttctccttcttcttttccCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39651 lncRNA upstream 111042 59887856 ~ 59985113 (+) True G29567
TU39643 lncRNA upstream 238573 59857241 ~ 59857582 (+) True G29560
TU39641 lncRNA upstream 243631 59852071 ~ 59852524 (+) True G29558
TU39604 lncRNA upstream 392045 59700063 ~ 59704110 (+) True G29526
TU39592 lncRNA upstream 463687 59632119 ~ 59632468 (+) True G29516
TU39679 lncRNA downstream 30152 60128061 ~ 60131474 (+) True G29591
TU39683 lncRNA downstream 59361 60157270 ~ 60162157 (+) True G29594
TU39688 lncRNA downstream 67557 60165466 ~ 60177344 (+) True G29596
TU39690 lncRNA downstream 68193 60166102 ~ 60177344 (+) False G29596
TU39740 lncRNA downstream 184676 60282585 ~ 60285943 (+) True G29639
XM_007256658.3 mRNA upstream 4347 60061098 ~ 60091808 (+) True rhoj
XM_007256654.3 mRNA upstream 309494 59767382 ~ 59786661 (+) True LOC103031133
XM_007256655.3 mRNA upstream 331082 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA upstream 331082 59753476 ~ 59765073 (+) False LOC103031439
XM_015607684.2 mRNA upstream 497823 59586709 ~ 59598332 (+) True nme6
XM_007256666.3 mRNA downstream 167928 60265837 ~ 60273289 (+) True LOC103035162
XM_007256665.3 mRNA downstream 181930 60279839 ~ 60281890 (+) True LOC103034839
XM_007256671.3 mRNA downstream 297669 60395578 ~ 60462048 (+) True LOC103036511
XM_022663950.1 mRNA downstream 298355 60396264 ~ 60462048 (+) False LOC103036511
XM_007256672.3 mRNA downstream 348796 60446705 ~ 60462048 (+) False LOC103036511
TU39573 other upstream 497914 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 536403 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 867456 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 867593 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 875119 59220532 ~ 59221036 (+) True G29382
XR_002649037.1 other downstream 332952 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 1595304 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1598891 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1828197 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2741326 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile