RNA id: TU39679


Basic Information

Item Value
RNA id TU39679
length 2222
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G29591
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60128061 ~ 60131474 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttttattttggtcTAGTTTACAGACAGAGTGATGTACTCAACCAAGCATGTGGAAGTCCAAACAAGCAGGTTAAGATTTAATCTACTGAAAACACATTGACCGTCAAGTGTCACTTTACAGTATTCTCTCCTACTGCTGACTGTATTAGATCAAAATTACAGTTCTTGTTTTTCCTCTTCAAGATCATTGGGTTAGATCAATGTTAACAGCATCCATGTTAACAGCAGTGCATAATAACAGCAGCATATCAGTCTCTGACCTACTGAAGGTCAGTTACGAGCCTGTATCTACCACACATCTTACTGTTCAAATCTATCTGTAAGACCTGGACTACCTGGATGTTGAATGTAATAAGtagatattttacaaaaaatggtGTGAGATTTTCAAATATGATCAAGATATGAAAAGTCCAGCTATCAGAGACCCACACAGACATCTGAATCAGTATTATAGGAGTACTCCAGCATTTTACAATCTAAACTCTCTGCACTGTTTCTATACTACTTTGGCGTTTGGTTATCAtaaaaaacggaaaaaagaaaaagaaaagtgattTCTCTGAAGAGAAACCTCTTTCAAGAGAAGCCAATATGTGTGCTAGAACTAACAACATGCCCATATTAGGAATGGCTGTGATCAGGCCCTGTGTTCCAAACCTGAACTTTTTTCTCCCAAATGATACTGAATTCtccaaattatatataaaaaataaaaagaaaattccTCATATATAGGAGCACTGTTTTAACCCTAAAATGgcctttattacttttattccCCATCAAATTTGACATACATCCAGCCCACTATcgcaagtctttttttttttttttttttacactaaacaCAATGGGTTGCTGCACATAACCAGACTATAAGCTAATACCAATGCTAGACTAAGCTGCTAGCCGACTGGCTTTTACCAGATCTTCTCCCAAATATCTGTGATATTTTGCCTATGCCAGTGTCCACAAAGGGTAAGCAATCACAAATGTAGTCCACAGAGATTAAGTTGAGAAATGCTGAAgtattactgtaatttaaaagacagaaagacattcattcaataaaataatgaaaaaaaaaaaaaattaaacacatacTTAAACATGGACTGGGACACTTGGATAATGACTCTTCCACAGCCTTAGGTATTTAACTGGGACACATTACCGGTAGTTTACTTCAGCACAAGCATTGGCAAATCTAAATGTCTAGATTACAACTCCCTGGAATTTTTATGCCTACATTTACACCTTCAACATTGAGAGATAGCGTTTGATATATGCCACTGCAGTATGCAGTACTCACCCAGTCTTTGTCTAGCTGCTAAACATCACAACAGCCTCACAACGCCATGAACTGACAAACAAAGCAGATTCTTCACCTGTCAGCTACGAGTGCATTTTAATACgttttataaaaatgtgaaattcactGGACCAAACAAAAACTATAGTTACAAAATACTTCTCTTTTcacaccaaataaaaaaaaacaacaacACAACAGTGATAAGACAACCaaacataaaaagaataaaatggataaaaataagGATTCTGATCAAATTGGAAAAGTTCAAGCCTTATTTGGATAGAGAGCAGTGGCAGACGATGATGTATTACTGGCCTACACAGAGGCAGAACTTCAGCTGCAGATTCTTCAGGAAAGGTTCAGGTGGTTGAAGAGCAGGGGCACTAGGCAGGCACAGCAGACGGCCACCGTGCCGTACACCAGGAAGCGGTAAGTCAGCTCCACATGAGGATTCTGTCTAGCCTTGCGCACGTCGTCACAGGGAACGCCAAACATTCTGCAAGCTAGTGGGATAGCCACGGCCTTCATGACCGCACGCACAGCTAGCAGCACAGCCACGCCCACAAGGAGCCGCAGAAATGAGCGTCCTAGCAACGAAGAGTCAATAGTGGGCATCTTGAGGGGCAGGGAGGACAGCGGAGGGTCATTCTGCAGACCCAGCTGGTGGTTGAGATGGCAGCCCAAAGCACCTCCAGCTCCAGTGGCTAAAGCCTGAGCCGTGTCCCCTCGAGACGTGCTCCAGGAGTCCAGAGAGAAAGCCACGAGCGACAGGCCGATGTGCAGCAGCAGGATGACCAGAGGCGCATACCTGCTAGACAGGTAGAATGTGTCAATGTCGTCAAACACAGGAAGAAAGGCAGCCAGGATTAACAAGCTGTAGAGGAAGCCCATGATCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39665 lncRNA upstream 30152 60096155 ~ 60097909 (+) True G29580
TU39651 lncRNA upstream 142948 59887856 ~ 59985113 (+) True G29567
TU39643 lncRNA upstream 270479 59857241 ~ 59857582 (+) True G29560
TU39641 lncRNA upstream 275537 59852071 ~ 59852524 (+) True G29558
TU39604 lncRNA upstream 423951 59700063 ~ 59704110 (+) True G29526
TU39683 lncRNA downstream 25796 60157270 ~ 60162157 (+) True G29594
TU39688 lncRNA downstream 33992 60165466 ~ 60177344 (+) True G29596
TU39690 lncRNA downstream 34628 60166102 ~ 60177344 (+) False G29596
TU39740 lncRNA downstream 151111 60282585 ~ 60285943 (+) True G29639
TU39743 lncRNA downstream 156393 60287867 ~ 60288093 (+) True G29641
XM_007256658.3 mRNA upstream 36253 60061098 ~ 60091808 (+) True rhoj
XM_007256654.3 mRNA upstream 341400 59767382 ~ 59786661 (+) True LOC103031133
XM_007256655.3 mRNA upstream 362988 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA upstream 362988 59753476 ~ 59765073 (+) False LOC103031439
XM_015607684.2 mRNA upstream 529729 59586709 ~ 59598332 (+) True nme6
XM_007256666.3 mRNA downstream 134363 60265837 ~ 60273289 (+) True LOC103035162
XM_007256665.3 mRNA downstream 148365 60279839 ~ 60281890 (+) True LOC103034839
XM_007256671.3 mRNA downstream 264104 60395578 ~ 60462048 (+) True LOC103036511
XM_022663950.1 mRNA downstream 264790 60396264 ~ 60462048 (+) False LOC103036511
XM_007256672.3 mRNA downstream 315231 60446705 ~ 60462048 (+) False LOC103036511
TU39573 other upstream 529820 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 568309 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 899362 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 899499 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 907025 59220532 ~ 59221036 (+) True G29382
XR_002649037.1 other downstream 299387 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 1561739 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1565326 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1794632 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2707761 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile