RNA id: TU39683


Basic Information

Item Value
RNA id TU39683
length 993
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G29594
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60157270 ~ 60162157 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGACCTTAGGCACATGTGAAGCTGCTCCAAAGcattttatagtatttataaGGCTTTTCTATTGAGAATATATACGCCATGTGTGGATAACTTAACATTTGTGTTAGCGGCAATGTGTGTAATTTAGAGTATGTTAGGCATTTTGGACAGTGATATTTTTCTGTGACTGCAAAATGACTAATCAATTATTTCTGACTGCCAGTAAATTCTtacatattgtaaaaaaaatgaaagagttTAAGTAAAGGTTTGAGAACCTGCTTGGGCATGGCAGTGTAATAAAACACCTTCTCAGACTCAAGCTTCCTGTAGACATACACAACATCCAAGTGCTGACAGCTGAGAGCCTCCGAAACAAAATTCTGAATGTGCACCCAGTCCTTTAAAGCAATCCAAATCTTTTCCTTAGGCAAGGGAATCTGTGCATGGTAAAGGCCGTAGAACATGTACAGTGCTCCTGCCCTGATCTGAAAGCTGTACGGGGGCAGGAAGTAACTGTACACCGTGGCAAAGGCAAGGCGAGTGAAAGTTCTTTTCTCCAGGCGTGTGGTCATTCCAAAACACACTGGAGAAGTCCATGTCTCTCCATATAGCTGCAAACTCCTCATATCGCACCGAGTCTGTTTGCTGGAAGCGGCCCAGCAGCTCCTCACAGTCGGATTTAAACGGAACCCAGAAATAATCGCAGAATTTCACCGCAGCTGTTGTCATGATTAATCTGGCAGTGGTGAGAAACCCCAATAACCCTGTGCTGAAGTATCAGTTAGATTTATGTGACTAAATTCAGTAAAGTCAGTTCATGAAGACACGAAGTTTTGCGGACTCGTTGACCAGGAGCTTTAATACCACCTCAATCCATCCATAGAGTCACTAAATCCCAACCAATCAGCTTTCAGTCATTTTTAAACCTAATTAACTTGTTTTGtaacaatataattatttacagcTTTGTGATATTCTCTTCAAATTCCCAAAAAGGTTGGCCTTGtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39679 lncRNA upstream 25796 60128061 ~ 60131474 (+) True G29591
TU39665 lncRNA upstream 59361 60096155 ~ 60097909 (+) True G29580
TU39651 lncRNA upstream 172157 59887856 ~ 59985113 (+) True G29567
TU39643 lncRNA upstream 299688 59857241 ~ 59857582 (+) True G29560
TU39641 lncRNA upstream 304746 59852071 ~ 59852524 (+) True G29558
TU39688 lncRNA downstream 3309 60165466 ~ 60177344 (+) True G29596
TU39690 lncRNA downstream 3945 60166102 ~ 60177344 (+) False G29596
TU39740 lncRNA downstream 120428 60282585 ~ 60285943 (+) True G29639
TU39743 lncRNA downstream 125710 60287867 ~ 60288093 (+) True G29641
TU39764 lncRNA downstream 189161 60351318 ~ 60353130 (+) True G29662
XM_007256658.3 mRNA upstream 65462 60061098 ~ 60091808 (+) True rhoj
XM_007256654.3 mRNA upstream 370609 59767382 ~ 59786661 (+) True LOC103031133
XM_007256655.3 mRNA upstream 392197 59753476 ~ 59765073 (+) True LOC103031439
XM_022663876.1 mRNA upstream 392197 59753476 ~ 59765073 (+) False LOC103031439
XM_015607684.2 mRNA upstream 558938 59586709 ~ 59598332 (+) True nme6
XM_007256666.3 mRNA downstream 103680 60265837 ~ 60273289 (+) True LOC103035162
XM_007256665.3 mRNA downstream 117682 60279839 ~ 60281890 (+) True LOC103034839
XM_007256671.3 mRNA downstream 233421 60395578 ~ 60462048 (+) True LOC103036511
XM_022663950.1 mRNA downstream 234107 60396264 ~ 60462048 (+) False LOC103036511
XM_007256672.3 mRNA downstream 284548 60446705 ~ 60462048 (+) False LOC103036511
TU39573 other upstream 559029 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 597518 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 928571 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 928708 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 936234 59220532 ~ 59221036 (+) True G29382
XR_002649037.1 other downstream 268704 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 1531056 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1534643 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1763949 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2677078 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile