RNA id: TU39706


Basic Information

Item Value
RNA id TU39706
length 1149
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G29608
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60074072 ~ 60091759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATATTTGGCAAAAagcagtatatatagtatacaacCCAAAActagaaatataaaaagtaaagtaataatCACTACATTCTAAATTatgataataacaataaaaaagttaaatatatagGCTTACAGTTACACGTTTGAGTTCAAGTTATTGCTGCCGTAGCCAGTGCTGACGCTGTTCTTCTTTGGATAATTACAGTATACAGTCTGTTGCATAGGACGACTCAAGGCACAGTGTCGTAAGACGAGTGAAGAAACACAATTCTATGCTACATTTTAAAGGCACATGCTGTAGATTCAGGCTCACTCTTCCTCTGTGTGGACCAGGCCTTCCTCCTTGTACTCGTGAGGAAGGTCACTGGCACCCTGTGGGCTCTGGAGGAAGTCCCTGAGGTCACGCTGAAAGGCAACCAGTGTTTTTACATCCAGATAAGGAGCTGTGAAAGGAAGAAGTTCAGAACCGATGCAGGTGTGCATTTAGAAAGCTTTCAGAGAGTAGCCTCTCTCTGTTTAGAGCGGTTTCTGAAGCTCTGCATGGATGCTTTTGAAGGCAAAATGACTTTAGCCCTTGAACTTGCTGTTATTCATAGGAACATTTAGTAGATAGTAAAATGACATGTTGCCGTGACTCTGCTGGTTGAGGGCACATTCTAGAGAGCTGGagaactgtaattattattgctaaaaaaaaaagtgaagtttACGAGGTCAGATTTGGCTGAGAGAAATGTATTGCAATTCCTCTTGCACTCCAGTGATTGCCTTAATCAAAACTGTGATTTTGTGATGTAGGGCTGAATGATATGGTAAAATGATTGTATCTCGatatataaagacatttttagggTAGATCATATTGTTTGCAAAGTTTTGCCATGTAGACAAAAGGCACCACTAGAGTTGGGGTGTACAATATGGACAAATGTGGGCTAATGCTGTTGGACATCCcagtattaatattaaacacaagaCATAAGAAACTCCTATAACATTAAGCTTCTTAAACAGCTGCTTTAGATTcccaataaaagtaaaagtatgaaTAAAAGTATGTGTCCACTAGCATTTAGCCTCaacgcatcctattcatttcaatggagaaAGATGCTGGATGCCGAAATGCATAATGGCCTGTGTTGCGTCAGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39646 lncRNA downstream 215733 59858066 ~ 59858339 (-) True G29563
TU39642 lncRNA downstream 221604 59852055 ~ 59852468 (-) True G29559
TU39584 lncRNA downstream 466226 59607175 ~ 59607846 (-) True G29509
TU39571 lncRNA downstream 495677 59576259 ~ 59578395 (-) False LOC111190079
XR_002649010.1 lncRNA downstream 495680 59576238 ~ 59578392 (-) True LOC111190079
TU39772 lncRNA upstream 259514 60351273 ~ 60352884 (-) False LOC103035785
TU39775 lncRNA upstream 263710 60355469 ~ 60355877 (-) False LOC103035785
TU39787 lncRNA upstream 292244 60384003 ~ 60384462 (-) True G29681
TU39791 lncRNA upstream 296221 60387980 ~ 60388361 (-) True G29684
TU39815 lncRNA upstream 303890 60395649 ~ 60396246 (-) True G29702
XM_007256657.2 mRNA downstream 14472 59882140 ~ 60059600 (-) True LOC103032183
XM_022663890.1 mRNA downstream 243181 59792576 ~ 59830891 (-) True LOC103031863
XM_015607686.2 mRNA downstream 369989 59700034 ~ 59704083 (-) True LOC107197813
XM_007256653.3 mRNA downstream 465081 59599420 ~ 59608991 (-) True LOC103030505
XM_022663830.1 mRNA downstream 500461 59562829 ~ 59573611 (-) True eif2b4
XM_007256660.3 mRNA upstream 5729 60097488 ~ 60123478 (-) False LOC103032801
XM_007256659.3 mRNA upstream 5729 60097488 ~ 60117562 (-) True LOC103032801
XM_007256661.3 mRNA upstream 36288 60128047 ~ 60145920 (-) True LOC103033561
XM_022663912.1 mRNA upstream 57638 60149397 ~ 60162066 (-) True LOC103034188
XM_007256662.3 mRNA upstream 71581 60163340 ~ 60177354 (-) True LOC103033873
TU39539 other downstream 635774 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 1139283 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 1899368 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 3379947 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 4257474 55815872 ~ 55816598 (-) True G28536
TU39714 other upstream 65779 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 277287 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 1741689 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 3118522 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 3118522 63210281 ~ 63256634 (-) False fryl

Expression Profile