RNA id: TU39764


Basic Information

Item Value
RNA id TU39764
length 1813
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G29662
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60351318 ~ 60353130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACGACAAGGAGGTTAAAAGATTAGCTGAACAGAAATTCAGTGTTTGAAGGTGCTGGAGGGGTTGTGGAAATAAAAATCCTTTCACATCATTCAGTTTGTAAGAAGTAATGTATCATATTCATTAAATCAGAAAGACAGAATTTCAATTCACCTggctttttaattaaaagtcaaTTAAAGCTGCAGTAGGTCTGCAGAACGCTTTTGTTTCACCAAATTAAAActagtgtcagaaaccacatcaCACATGATATCTTAAGACAAATTCTCCAGGCTTCTCTATTCACCAACTGAATTCCATCCTTACACTGGTAAATGGAAATTAACAGCCCAAAaggaaaatgattaaaaaagacCCACATTTCCATATTTCTTGTGCATGCCCATAAGCTGTACTCATTCCAAGTTTTCAAAACAGCATTCCATAAAAAATATGTAGTCATGTAACCATGAAGGCAGCTTGGGGGACCTGTATTAATGTCACTTGGGCATTTTGAATAAaatggttagttagttaggaaTTAGTGGTTCTATCATTCTACATTTGAAACTCTatccaataaaaatgtaaattcaaGTCAATCTTGCCATATTTTAGATACACTATTTGCCCTGAATCCCAATCCTATGTCTTATTTTGTTCTCCAAGCTACTGTCCATCAAGCCTTTATGGTTTATCAGCACACATTTGAATTTGGAAGCTCCAGCAGTTTACAATATACAGCAGGGGGAGCTGTAAAATGAAATCCCATCCCCctggaaaataatcaataataataacaataatcaaTTAAGGtatcacaaaaaatataaaagtaaaagaatgTGTACTTTTATATCTATTTCCAAGGCCAGAAGCAAATGGGTGAAGGTGGCACTTTACACTAAATGTCTGATACAGTGCACTGGTTGATCAAAGTTAAAACATACACTAAAAGGCCACGTGGTTACCACGGCAGGGATTAAGTTTAGTCTTAACTATACAACATTTTGAATAAAGATTATCTATTGAAAGGAAAATTATAGTCTATGACTTGGCTTAAGTTTTCCAtgttgttttatacttttcTGTCTGATCTGAACATAAATGAATGAAAGCTGTGTCGTGTGTAGATTTGGTTTATGTGAATATACACAGCTGTTCACAgtcttgctgttgtgtttacacagGATGGAAGAATTGGGTTACGTCAGATGGTGCAACATCGTAAGACAGATCACACATTTGAAAAATGGATATCTGCATGTATCCCTGCTATAAAGCCTCCAGCAGTGGGCTGTGAAGCTGTGAAAccgtgttctctggagtgaaaGAGTTCCATCCAAAATGTTTCTTTCTACTTGTTCTCTCACTCAACACCACAGCGCTCCAGGGCAGGGCCACGCTGAGCCAGCAGCACGCCACTAAGCCCCGAAACTGCCTGCctgcttgcttttttttttcactttttttcttcttgcctCAGAACTTCTGCTTGTTTCATTATAATGAGAAAAGTAGGATTTGCATTTGTCATTAATATGCATGAGCTTATTAACATTCTGATTTTGATTGCCTGTTATTGAGGTCACATGTTAAAATGATGGTAGAGGAAAAGGCCCCTAATTCCATTCTGCACATTTTGTGCAGCATAGCACCGTTACCACTCTGTTTCAAGGATAATAATACTCAATATCCCATTAAGACTATTTATACACTTTTAGGTGGCTTTTTCTGGATGTAAAACGCTGAGGGCATTAATTCACTTCAAATGCACTTTACAATACATGATCATATCTTACACACTGTATAGTTTCTTGTAAGAGCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39743 lncRNA upstream 63225 60287867 ~ 60288093 (+) True G29641
TU39740 lncRNA upstream 65375 60282585 ~ 60285943 (+) True G29639
TU39688 lncRNA upstream 173974 60165466 ~ 60177344 (+) True G29596
TU39690 lncRNA upstream 173974 60166102 ~ 60177344 (+) False G29596
TU39683 lncRNA upstream 189161 60157270 ~ 60162157 (+) True G29594
TU39765 lncRNA downstream 3347 60356477 ~ 60356882 (+) True G29663
TU39785 lncRNA downstream 28911 60382041 ~ 60382256 (+) True G29679
TU39800 lncRNA downstream 110847 60463977 ~ 60519867 (+) True G29691
TU39856 lncRNA downstream 167212 60520342 ~ 60525051 (+) True c3h14orf2
TU39919 lncRNA downstream 336871 60690001 ~ 60690253 (+) True G29772
XM_007256665.3 mRNA upstream 69428 60279839 ~ 60281890 (+) True LOC103034839
XM_007256666.3 mRNA upstream 78029 60265837 ~ 60273289 (+) True LOC103035162
XM_007256658.3 mRNA upstream 259510 60061098 ~ 60091808 (+) True rhoj
XM_007256654.3 mRNA upstream 564657 59767382 ~ 59786661 (+) True LOC103031133
XM_022663876.1 mRNA upstream 586245 59753476 ~ 59765073 (+) False LOC103031439
XM_007256671.3 mRNA downstream 42448 60395578 ~ 60462048 (+) True LOC103036511
XM_022663950.1 mRNA downstream 43134 60396264 ~ 60462048 (+) False LOC103036511
XM_007256672.3 mRNA downstream 93575 60446705 ~ 60462048 (+) False LOC103036511
XM_007230914.2 mRNA downstream 132773 60485903 ~ 60490965 (+) True rd3l
XM_022663952.1 mRNA downstream 167220 60520350 ~ 60522292 (+) False c3h14orf2
TU39573 other upstream 753077 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 791566 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 1122619 59228068 ~ 59228699 (+) False LOC111194375
TU39414 other upstream 1122756 59228311 ~ 59228562 (+) False LOC111194375
TU39407 other upstream 1130282 59220532 ~ 59221036 (+) True G29382
XR_002649037.1 other downstream 77731 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc other downstream 1340083 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 1343670 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1572976 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2486105 62839235 ~ 62843043 (+) False LOC103045797

Expression Profile