RNA id: TU39772


Basic Information

Item Value
RNA id TU39772
length 1612
lncRNA type sense_over
GC content 0.46
exon number 1
gene id LOC103035785
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60351272 ~ 60364744 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAATAACAGGCAATCAAAATCAGAATGTTAATAAGCTCATGCATATTAATGACAAATGCAAATCCTACTTTTCTCATTATAATGAAACAAGCAGAAGTTCTGaggcaagaagaaaaaaagtgaaaaaaaaaagcaagcagGCAGGCAGTTTCGGGGCTTAGTGGCGTGCTGCTGGCTCAGCGTGGCCCTGCCCTGGAGCGCTGTGGTGTTGAGTGAGAGAACAAGTAGAAAGAAACATTTTGGATGGAACTCtttcactccagagaacacggTTTCACAGCTTCACAGCCCACTGCTGGAGGCTTTATAGCAGGGATACATGCAGATATCCATTTTTCAAATGTGTGATCTGTCTTACGATGTTGCACCATCTGACGTAACCCAATTCTTCCATCctgtgtaaacacaacagcaagacTGTGAACAGCTGTGTATATTCACATAAACCAAATCTACACACGACACAGCTTTCATTCATTTATGTTCAGATCAGACAgaaaagtataaaacaacaTGGAAAACTTAAGCCAAGTCATAGACTATAATTTTCCTTTCAATAGATAATCTTTATTCAAAATGTTGTATAGTTAAGACTAAACTTAATCCCTGCCGTGGTAACCACGTGGCCTTTTAGTGTATGTTTTAACTTTGATCAACCAGTGCACTGTATCAGACATTTAGTGTAAAGTGCCACCTTCACCCATTTGCTTCTGGCCTTGGAAATAGATATAAAAGTACAcattcttttacttttatattttttgtgataCCTTAAttgattattgttattattattgattattttccagGGGGATGGGATTTCATTTTACAGCTCCCCCTGCTGTATATTGTAAACTGCTGGAGCTTCCAAATTCAAATGTGTGCTGATAAACCATAAAGGCTTGATGGACAGTAGCTTGGAGAACAAAATAAGACATAGGATTGGGATTCAGGGCAAATAGTGTATCTAAAATATGGCAAGATTGACttgaatttacatttttattggatAGAGTTTCAAATGTAGAATGATAGAACCACTAAttcctaactaactaaccattTTATTCAAAATGCCCAAGTGACATTAATACAGGTCCCCCAAGCTGCCTTCATGGTTACATGACTACATATTTTTTATGGAATGCTGTTTTGAAAACTTGGAATGAGTACAGCTTATGGGCATGCACAAGAAATATGGAAATGTGGgtcttttttaatcattttcctTTTGGGCTGTTAATTTCCATTTACCAGTGTAAGGATGGAATTCAGTTGGTGAATAGAGAAGCCTGGAGAATTTGTCTTAAGATATCATGTGtgatgtggtttctgacactagTTTTAATTTGGTGAAACAAAAGCGTTCTGCAGACCTACTGCAGCTTTAAttgacttttaattaaaaagccAGGTGAATTGAAATTCTGTCTTTCTGATTTAATGAATATGATACATTACTTCTTACAAACTGAATGATGTGAAAGGATTTTTATTTCCACAACCCCTCCAGCACCTTCAAACACTGAATTTCTGTTCAGCTAATCTTTTAACCTCCTTGTCGTATTAATGCATCTGTACTTTTTGCAACCAAATAAATTGATTGCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39706 lncRNA downstream 259514 60074072 ~ 60091759 (-) True G29608
TU39646 lncRNA downstream 492934 59858066 ~ 59858339 (-) True G29563
TU39642 lncRNA downstream 498805 59852055 ~ 59852468 (-) True G29559
TU39584 lncRNA downstream 743427 59607175 ~ 59607846 (-) True G29509
TU39571 lncRNA downstream 772878 59576259 ~ 59578395 (-) False LOC111190079
TU39775 lncRNA upstream 2585 60355469 ~ 60355877 (-) False LOC103035785
TU39787 lncRNA upstream 31119 60384003 ~ 60384462 (-) True G29681
TU39791 lncRNA upstream 35096 60387980 ~ 60388361 (-) True G29684
TU39815 lncRNA upstream 42765 60395649 ~ 60396246 (-) True G29702
TU39823 lncRNA upstream 108104 60460988 ~ 60463346 (-) True G29707
XM_007256667.3 mRNA downstream 39627 60307935 ~ 60311646 (-) True LOC103035477
XM_007256664.3 mRNA downstream 132217 60184694 ~ 60219056 (-) True LOC103034514
XM_007256662.3 mRNA downstream 173919 60163340 ~ 60177354 (-) True LOC103033873
XM_022663912.1 mRNA downstream 189207 60149397 ~ 60162066 (-) True LOC103034188
XM_007256661.3 mRNA downstream 205353 60128047 ~ 60145920 (-) True LOC103033561
XM_022663936.1 mRNA upstream 2316 60355200 ~ 60364744 (-) False LOC103035785
XM_007230924.3 mRNA upstream 249526 60602410 ~ 60607157 (-) True LOC103027016
XM_007230926.3 mRNA upstream 344402 60697286 ~ 60702253 (-) False xrcc3
XM_007230925.3 mRNA upstream 344402 60697286 ~ 60702249 (-) True xrcc3
XM_007230931.3 mRNA upstream 378318 60731202 ~ 60735851 (-) False btbd6
TU39714 other downstream 189249 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 912975 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 1416484 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 2176569 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 3657148 56646027 ~ 56694125 (-) False LOC103031416
XR_002649735.1 other upstream 16162 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 1480564 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 2857397 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 2857397 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 2857397 63210281 ~ 63231566 (-) False fryl

Expression Profile