RNA id: TU39815


Basic Information

Item Value
RNA id TU39815
length 577
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G29702
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60395649 ~ 60396246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGGCTACCGCTAGCGGAGTCCCGGAGCTCTTCAGCGGGACACGGCTACAGCTAGAGCTAGAGACACAGCTATAAACACACACGGCCGCGGGGGTAACGAGAgcaggagctactgaacacagtGATTAATGAACACATAGAGCAGCCCGCTGTTAGTTAGTTAACGCTAGGTTCGCTAACTAGCTTAACTAGTAGAGTAAACACAAACTTAGCCTCTCAGCCAAATGACCTGTAGATGCAGTTTCCATGACAACAGGGAGCGGCTGGCGCGCGCTCGCGGACTCGCTCCGATCGTCCTCCGGCTCCCCTGAGCGGGCCGCGGCGCCGCCGAACCCGGCCGTCCTCTCGAAGCCGTCTCCGTACCAGCCGTCCTCTGAAGCGGGCTCCTCGCTGGGCTTGGCGGACATGCTGGTCTCGCGGGCTCGTCAGCGCGTGCTGTGTCTCGCACCGACCGGAGGCTCGTTAATCTGAACCGGAGAGCGGAGCAGTGAGGGCACGGGACCGGCTGAGCTCAGAGGACGAGCCGCGGCGTGTCGCAggtctctctcagtgtgtgtgtgtgtgtgtagcttctCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39791 lncRNA downstream 7288 60387980 ~ 60388361 (-) True G29684
TU39787 lncRNA downstream 11187 60384003 ~ 60384462 (-) True G29681
TU39775 lncRNA downstream 39772 60355469 ~ 60355877 (-) False LOC103035785
TU39772 lncRNA downstream 42765 60351273 ~ 60352884 (-) False LOC103035785
TU39706 lncRNA downstream 303890 60074072 ~ 60091759 (-) True G29608
TU39823 lncRNA upstream 64742 60460988 ~ 60463346 (-) True G29707
TU39824 lncRNA upstream 65150 60461396 ~ 60463346 (-) False G29707
TU39833 lncRNA upstream 67730 60463976 ~ 60519797 (-) True G29716
TU39837 lncRNA upstream 67730 60463976 ~ 60519797 (-) False G29716
TU39839 lncRNA upstream 67730 60463976 ~ 60519797 (-) False G29716
XM_022663936.1 mRNA downstream 30905 60355200 ~ 60364744 (-) False LOC103035785
XM_007256668.3 mRNA downstream 30906 60351272 ~ 60364743 (-) True LOC103035785
XM_007256667.3 mRNA downstream 84003 60307935 ~ 60311646 (-) True LOC103035477
XM_007256664.3 mRNA downstream 176593 60184694 ~ 60219056 (-) True LOC103034514
XM_007256662.3 mRNA downstream 218295 60163340 ~ 60177354 (-) True LOC103033873
XM_007230924.3 mRNA upstream 206164 60602410 ~ 60607157 (-) True LOC103027016
XM_007230926.3 mRNA upstream 301040 60697286 ~ 60702253 (-) False xrcc3
XM_007230925.3 mRNA upstream 301040 60697286 ~ 60702249 (-) True xrcc3
XM_007230931.3 mRNA upstream 334956 60731202 ~ 60735851 (-) False btbd6
XM_007230930.3 mRNA upstream 334956 60731202 ~ 60734035 (-) False btbd6
XR_002649735.1 other downstream 26035 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 233625 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 957351 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 1460860 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 2220945 58169321 ~ 58174704 (-) False LOC111189852
XR_002649101.1 other upstream 1437202 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 2814035 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 2814035 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 2814035 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 2933798 63330044 ~ 63334846 (-) True G30376

Expression Profile