RNA id: TU39965


Basic Information

Item Value
RNA id TU39965
length 204
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G29812
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60827737 ~ 60827940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacagaatccctccttaatctatgCTCACTTCCTtaaactatggcaacaacacacttaccacaGCACcctacctaagcacaatcacacacaataaatgacattataagttgcgtgagcagaacacagcaaccactaccatctgatactggctcaacaagaatccagaagcatagcgaactatgttcatggtccgtgcctcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39923 lncRNA upstream 125614 60700345 ~ 60702123 (+) True G29775
TU39919 lncRNA upstream 137484 60690001 ~ 60690253 (+) True G29772
TU39856 lncRNA upstream 302686 60520342 ~ 60525051 (+) True c3h14orf2
TU39800 lncRNA upstream 307870 60463977 ~ 60519867 (+) True G29691
TU39785 lncRNA upstream 445481 60382041 ~ 60382256 (+) True G29679
TU39978 lncRNA downstream 101182 60929122 ~ 60930577 (+) True G29825
TU40091 lncRNA downstream 479279 61307219 ~ 61309843 (+) True G29916
TU40101 lncRNA downstream 539334 61367274 ~ 61383834 (+) True G29921
TU40171 lncRNA downstream 1074823 61902763 ~ 61902969 (+) True G29972
TU40173 lncRNA downstream 1078643 61906583 ~ 61907066 (+) True G29974
XM_022663992.1 mRNA upstream 33907 60703082 ~ 60793830 (+) True brf1
XM_022663998.1 mRNA upstream 33907 60703082 ~ 60793830 (+) False brf1
XM_007230917.3 mRNA upstream 228371 60545957 ~ 60599366 (+) False ppp1r13b
XM_022664028.1 mRNA downstream 166987 60994927 ~ 61163598 (+) True LOC103031412
XM_007238742.3 mRNA downstream 866015 61693955 ~ 61704828 (+) False l3hypdh
XM_022664062.1 mRNA downstream 866128 61694068 ~ 61704828 (+) True l3hypdh
XM_007238741.3 mRNA downstream 869536 61697476 ~ 61704828 (+) False l3hypdh
XM_007238760.3 mRNA downstream 1098140 61926080 ~ 61935701 (+) False LOC103046322
XR_002649037.1 other upstream 384230 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 1229496 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 1267985 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 1599038 59228068 ~ 59228699 (+) False LOC111194375
trnad-guc other downstream 865273 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 868860 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 1098166 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 2011295 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 2507794 63335734 ~ 63345693 (+) True G30362

Expression Profile