RNA id: TU39978


Basic Information

Item Value
RNA id TU39978
length 673
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G29825
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60929122 ~ 60930577 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCTCTCGAGAaggttgaaaagaagatggagaagtTTCAGCGTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaaaatacagaacacatgtaaacaactaaagaaaaacagaacatggcacatgtaaataaatcaaataaacacagcacagactgcatgaaattggatttctttatttgttctttaaaagtttggagaaaggaaacctgtGGAATACAAAAGAAACTTGAAAAATTACTGCATTTGATACATggatataattaaacattttaagaacattacctaccttttattatcctttctttttctgcGAGAAAATATCCTGTTTAAGGAAATGAAGACAAGAAATATGACTGTGTTAAACTTGGTGTTGTTTGGATTCagtatttacttcatttatatttatataaaacatttttgcaattattattGCATTGGTTTTGGCACAAACCAATTACtaatgcatctcagaaaatctgaAGATCATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39965 lncRNA upstream 101182 60827737 ~ 60827940 (+) True G29812
TU39923 lncRNA upstream 226999 60700345 ~ 60702123 (+) True G29775
TU39919 lncRNA upstream 238869 60690001 ~ 60690253 (+) True G29772
TU39856 lncRNA upstream 404071 60520342 ~ 60525051 (+) True c3h14orf2
TU39800 lncRNA upstream 409255 60463977 ~ 60519867 (+) True G29691
TU40091 lncRNA downstream 376642 61307219 ~ 61309843 (+) True G29916
TU40101 lncRNA downstream 436697 61367274 ~ 61383834 (+) True G29921
TU40171 lncRNA downstream 972186 61902763 ~ 61902969 (+) True G29972
TU40173 lncRNA downstream 976006 61906583 ~ 61907066 (+) True G29974
TU40156 lncRNA downstream 978126 61908703 ~ 61917624 (+) False G29963
XM_022663992.1 mRNA upstream 135292 60703082 ~ 60793830 (+) True brf1
XM_022663998.1 mRNA upstream 135292 60703082 ~ 60793830 (+) False brf1
XM_007230922.3 mRNA upstream 329756 60545962 ~ 60599366 (+) False ppp1r13b
XM_022664028.1 mRNA downstream 64350 60994927 ~ 61163598 (+) True LOC103031412
XM_007238742.3 mRNA downstream 763378 61693955 ~ 61704828 (+) False l3hypdh
XM_022664062.1 mRNA downstream 763491 61694068 ~ 61704828 (+) True l3hypdh
XM_007238741.3 mRNA downstream 766899 61697476 ~ 61704828 (+) False l3hypdh
XM_007238760.3 mRNA downstream 995503 61926080 ~ 61935701 (+) False LOC103046322
XR_002649037.1 other upstream 485615 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 1330881 59590989 ~ 59598241 (+) False nme6
TU39514 other upstream 1369370 59554326 ~ 59559752 (+) False atraid
TU39412 other upstream 1700423 59228068 ~ 59228699 (+) False LOC111194375
trnad-guc other downstream 762636 61693213 ~ 61693284 (+) True trnad-guc
trnad-guc_1 other downstream 766223 61696800 ~ 61696871 (+) True trnad-guc_1
TU40175 other downstream 995529 61926106 ~ 61936083 (+) True LOC103046322
TU40444 other downstream 1908658 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 2405157 63335734 ~ 63345693 (+) True G30362

Expression Profile