Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU40101 |
| length | 1146 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G29921 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 61367274 ~ 61383834 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0015250 | water channel activity | molecular_function |
| GO:0005372 | water transmembrane transporter activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU40091 | lncRNA | upstream | 57431 | 61307219 ~ 61309843 (+) | True | G29916 |
| TU39978 | lncRNA | upstream | 436697 | 60929122 ~ 60930577 (+) | True | G29825 |
| TU39965 | lncRNA | upstream | 539334 | 60827737 ~ 60827940 (+) | True | G29812 |
| TU39923 | lncRNA | upstream | 665151 | 60700345 ~ 60702123 (+) | True | G29775 |
| TU39919 | lncRNA | upstream | 677021 | 60690001 ~ 60690253 (+) | True | G29772 |
| TU40171 | lncRNA | downstream | 518929 | 61902763 ~ 61902969 (+) | True | G29972 |
| TU40173 | lncRNA | downstream | 522749 | 61906583 ~ 61907066 (+) | True | G29974 |
| TU40156 | lncRNA | downstream | 524869 | 61908703 ~ 61917624 (+) | False | G29963 |
| TU40157 | lncRNA | downstream | 524869 | 61908703 ~ 61917624 (+) | False | G29963 |
| TU40160 | lncRNA | downstream | 526241 | 61910075 ~ 61912205 (+) | True | G29963 |
| XM_022664028.1 | mRNA | upstream | 203676 | 60994927 ~ 61163598 (+) | True | LOC103031412 |
| XM_022663992.1 | mRNA | upstream | 573444 | 60703082 ~ 60793830 (+) | True | brf1 |
| XM_022663998.1 | mRNA | upstream | 573444 | 60703082 ~ 60793830 (+) | False | brf1 |
| XM_007230923.3 | mRNA | upstream | 767908 | 60574846 ~ 60599366 (+) | False | ppp1r13b |
| XM_007238742.3 | mRNA | downstream | 310121 | 61693955 ~ 61704828 (+) | False | l3hypdh |
| XM_022664062.1 | mRNA | downstream | 310234 | 61694068 ~ 61704828 (+) | True | l3hypdh |
| XM_007238741.3 | mRNA | downstream | 313642 | 61697476 ~ 61704828 (+) | False | l3hypdh |
| XM_007238760.3 | mRNA | downstream | 542246 | 61926080 ~ 61935701 (+) | False | LOC103046322 |
| XM_022664187.1 | mRNA | downstream | 566637 | 61950471 ~ 61983459 (+) | True | LOC103031223 |
| XR_002649037.1 | other | upstream | 923767 | 60430861 ~ 60443507 (+) | True | LOC111190190 |
| TU39573 | other | upstream | 1769033 | 59590989 ~ 59598241 (+) | False | nme6 |
| TU39514 | other | upstream | 1807522 | 59554326 ~ 59559752 (+) | False | atraid |
| TU39412 | other | upstream | 2138575 | 59228068 ~ 59228699 (+) | False | LOC111194375 |
| trnad-guc | other | downstream | 309379 | 61693213 ~ 61693284 (+) | True | trnad-guc |
| trnad-guc_1 | other | downstream | 312966 | 61696800 ~ 61696871 (+) | True | trnad-guc_1 |
| TU40175 | other | downstream | 542272 | 61926106 ~ 61936083 (+) | True | LOC103046322 |
| TU40444 | other | downstream | 1455401 | 62839235 ~ 62843043 (+) | False | LOC103045797 |
| TU40713 | other | downstream | 1951900 | 63335734 ~ 63345693 (+) | True | G30362 |
