RNA id: TU40273


Basic Information

Item Value
RNA id TU40273
length 2348
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G30042
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62047612 ~ 62092000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAtgtaaaccaaaaaaacagaatagagataatttgcatgtgtttttttgcacataatttataattaacatGATTTTATTCCAGCATTATACTAAGCACAAgcactttcagacttttcagatTTAGTATAACATACAATCCTACTCACACCTTATGGTTTGGTCCCAGTGGAGCTGCTGATTCACAGTCAGACAGCTGTgatttatctgtctgtcagcGCTTCACTTACCCTTCTCTCCTGGCTTTTACCTGCTATCAGTCACCAGTCATCAGTCACTGACTGTCAGCACAAACCAGCAGAGACACACTGAGTTACTGTCTACATTTCTATTAAAGCTACACACAATATCACCAGACAATCTAATAGCTCTACCACTaccaaagagagaaaaagagagagagagagagagagagagagagagagagagagagaaaaaagagctaaagaggtaaagagagagggaggaggttTTGGAGATGTGCACTGAGGAAGAAATAAGGTAAAGTGTTGGCTAAATTCTCTGCCTGTACAACATGTAACTGTGTCACATCATTGCTCATAAGCAAAATGTGTCAAATCAACATATTATGTTTAAAACAAATCCAAGGcctcatttttttgtgtagttTGACTGTGACTCCATGATTAAAACTTACTCGACACATTCACCAGTAACAGACTGAATTAAGCCTTTAAGCAAAATTTCAATAATAATATGTAACACAGTGGTGGTCCATCAAAGGACACAAGTGGTGCTCACTCTCAAAATTGTTTAACATTACATATTCAAACCTAATttaattgtttgtgtgttttcataAGCCTATGTTTCTATTtgtgagaacaaaaaaaaatctacacaaCACAAGCAAATTACCACATGCTCTAATTGAAGCCCACCAGATGAGGCTGTTGACCTACTGCCTCCTCTTATGAAtaaactgaccaatcagaatcAAGATGCAAATGATCTAATGTCCTTCACTGCTGGTCAAAACAAGCTGCTAAATAGAGGCAGAATCAAATGAGCCTCCGTCTGTACTGAAAAGCAGCTACAATCAGGCATTATGTTATGAAGCACTCTTCATTAAGTGTCACTTTAGTGCTCAGTGAGTCATTAGACTGTCTCTCTGTTTACAAATGAGAGTAAGCAGTTATTAGACCAGCTCTCTTTACAGCTTAGGGTACACTACGAGCTGTGACCTGGGTATACTGGTTAGAATTAGACTTTAAAAACTGCCTTTTATAATTATGAGTACATTTCTCATTGAgacactgtgtgttttttacacACAGCTACATAGTTTAAGATTgtattatatttctatattaattttattatctaattaatcaaattttaaGACTGTATGGTAATGAAAATTACTGTACTACcctgtgctttattattatggTTTTGCATAGTTGCTTTAGGTGTACTTTCTCCagatataatacatattaatgTTTGTATTACCTCTGTATTACATCTAATTCCCAAAGGCCAATTCCCTCATGTTTTCCTCCAATCATAGAGTGATGGCAAGCTGGAAGAGTGAATGTTGGCGTGTTTCTCCTCCAAGATGCATGAGGGGCCACCGCATCTTTATTAGACAGCTATAACACAGCGTCCTTGGACAGTTCAATGCAGGGAAAAGCTAACTGCCTCTCCTATTCCATCAGCCTCCAACATACCCAGGGGAAACAAGGCTAGGGATGTTATCCTGGACTCCTgatcacagcacagcagtggcATCATCAGGGACTGAAAGGACATTTTTGTTACGGACACGCATGCCTGACTTTGACGGAAAGTGGGGGAGATATTGTTTCACAACTAGCAGGCAAAATACAGGGATTTTTAGGGTGAACTGTGTTAGTGTTTTGACTCATCAATTTAAAACAGTTACTTTATTTCCTCTAAGTGGACACCTTCTAAACTTAATAATGAGCATCATCCTGCTTacttcaccagagttacatagtgcagttagcagtgtaGTACTTAACCCAGATAAGCAATAAAAGGGATGCTATTCTCCTTAGTAATAAAAGGACTGGATATAAAATTtacatttgaattaaaataaaagaagcaaAAGCATTCCCTCTAATAAATGTGGAAAAGAATGTGCTGCACTTGctccattttttttagctgcttGAGGCTTTGGACCACCACTGCTATCAGgtctttttcatctttttacataaaacactGGTGAATGTCTATTAATGATGGGTTGAATGTGTATTAGgtgatttttacacatttgCTTAGTGAACAAGACAGTTTTTAAATgggttagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40178 lncRNA upstream 109636 61937664 ~ 61937976 (+) True G29977
TU40156 lncRNA upstream 129988 61908703 ~ 61917624 (+) False G29963
TU40157 lncRNA upstream 129988 61908703 ~ 61917624 (+) False G29963
TU40177 lncRNA upstream 132460 61913064 ~ 61915152 (+) True G29976
TU40160 lncRNA upstream 135407 61910075 ~ 61912205 (+) True G29963
TU40338 lncRNA downstream 208834 62300834 ~ 62303159 (+) False G30097
TU40343 lncRNA downstream 208834 62300834 ~ 62303159 (+) True G30097
TU40344 lncRNA downstream 208834 62300834 ~ 62303159 (+) False G30097
TU40359 lncRNA downstream 232517 62324517 ~ 62356704 (+) True G30105
TU40364 lncRNA downstream 302920 62394920 ~ 62395161 (+) True G30110
XM_007233016.3 mRNA upstream 56948 61984639 ~ 61990664 (+) True LOC103029839
XM_022664187.1 mRNA upstream 64153 61950471 ~ 61983459 (+) True LOC103031223
XM_007233019.2 mRNA upstream 64154 61950471 ~ 61983458 (+) False LOC103031223
XM_007238760.3 mRNA upstream 111911 61926080 ~ 61935701 (+) False LOC103046322
XM_007238742.3 mRNA upstream 342784 61693955 ~ 61704828 (+) False l3hypdh
XM_007257006.3 mRNA downstream 699748 62791748 ~ 62793588 (+) True LOC103033766
XM_022678415.1 mRNA downstream 747220 62839220 ~ 62853288 (+) True LOC103045797
XM_007257008.2 mRNA downstream 777111 62869111 ~ 62885298 (+) True LOC103034413
XM_015607799.2 mRNA downstream 796868 62888868 ~ 62907516 (+) True LOC103046101
XM_007257051.3 mRNA downstream 817091 62909091 ~ 62925805 (+) True LOC103046397
TU40175 other upstream 111529 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 350741 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 354328 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 1604105 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 2449371 59590989 ~ 59598241 (+) False nme6
TU40444 other downstream 747235 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 1243734 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 1243734 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 1243734 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 1243734 63335734 ~ 63345693 (+) False G30362

Expression Profile