RNA id: TU40343


Basic Information

Item Value
RNA id TU40343
length 2046
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G30097
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62300834 ~ 62303159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCAAAATTAGACTTTTATTGGCCAGTTGGGCTGCGATGGTCATAACATCCACATATAACGGCAAACATAGCCCACAGAAACCCGGCGGCTGCCAGCTATCTGACAGCTGTCACTCAACCATCCTACTGTCAGTCACCTGAGTGTGAACTGGAGAACTACACACGGTCTGCTCTTTAGACTAGCACTGCTTGGCCCTTCTGTGACAGCCTGGAatgcatgtacacacacacacacacgcacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcctctgATGCGGAGAGACAGCACTAGGGATTAGGGCACTGCTAAAACTTCAGTAACGGGCTCTGCTCTTCAGTCCATCTCTGGTGTGCTCCAGTAGAGCTGTGAGCAGTGAGCAGAGCGCACTCCGAAGCCTCCAGCCTTCTGTCCGTAAGAGTAGCCTGTGGAGTGTAGCAGTGGGGATGGCCTCGGTAATGCTGGAAGGAGGGAGGTTGGGGTTAAGCCAGGAGAAAAGATTTTTCGAGCTGGGCGGGCGCACTGGGGCAAGAGCAACCAGAGGCTATTAGAAGAGACCAGGGGGAAAAGCTGCAATTAATTTATGTGGGGAGGAGGGAGAAGAAGTTACTACAAGAAAAACTGCTGTCTCTCCGGTGCCGTGTCTTTCCAGAGTtggagccttttttttttcctgggtaaataaattttggaatttttttataccgaaaagataaaaacatgcaaaaagccTTTCATTTGTAGTATACAAGTTTCATACTCCTTGTACTTCTTCATTGTCTACATCaacaaaaaggggaaaaaaataaaactgtacacaccatttaatttacagtagagttaaaaaacagaaataataccATAGGGTGACTAAGGCAGATGGAGCTTTAACAAAAGAAACCaattttatttgtgtaaaacaATGTCACATAAAAAAGGGAAAtcaaactaactaaaaaaatcTGCTAGAAAACAACGATAGGGGTTTCTCCCCTGCGCTTCACACCGGCTGCATAAATTAAACTTTTGGTGGAAAACgatgaataatataaaaaaacacaaaagaaaaaacaatgacaTGGAAatcaaaaatctaaatttctAGTGTACTGTACAATGCTGTTCTCTCGGTCTCATCTTCGGCTTGGCTGCGGTACGTGACGGGGTGGAACAGCGTGATGGCGTACAAACAGAAGCGTGTAGAAGCATAACCGTATTCTATAAACAGGCTCACAACAGAACCACTCAAAAAACTCAGAGCCAGTAAAGCCAATGAAACCAAGTATTCAGATCTGAAGTAAAAAGcaggaataaaacaacaaaaatgtacaaaaaggcACGTAATATCCCAGTGCTTCTGTACTGTGAAATTCAAGTGTAACTGAGCGTTCGCTTCAACGTTCTTGTAGTGTTCcttcagtgtttgtttttttttttttttttcttaatgtttcAATTATCGCACCAATGGGTCCCTCActcaggcaaaaaaaataactggTCAGATCCAGAGCTAGTCCAGATTCCTTCAGCTGGCTCTTTTTCGCTCCAGCAGAAAACCTGGGAAAGAGCCAGTTTTGTTGCCATGGTGATCCTCCTTCCTCTCGCTCATCCTCTCCTGGGGGAACATCGCTTTCTTCATTCTTCTGATTTTACACCCTGTCCATGTCCCATGATAAAAAAGTGccactcttctttttttttaatatatattttatttagattttttttgttgcacctCTTCCTCCAGTGGTCTTGGGACATCTCTGGGCTGAGGGGGGACGGGGGGGTTAGGGCTGGCTAGTCGTCGTTTCCTCCATACATGTCGGCCAGCTTGCGAAAGCGTGGTCCCCAGTCGTTGAGGTAGTCATAGTCCTGGTCTCCCCCGGAGCTGGAGGAGTGCAGGGAGCTGAGCGAGCCGGCCGTGGAGCCGCTGCCCTCGTAGTCGAACACCAACAGGGAGTCGTATGGGGGAGCTGTGGGGTCTGTATCCGCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40273 lncRNA upstream 208834 62047612 ~ 62092000 (+) True G30042
TU40178 lncRNA upstream 362858 61937664 ~ 61937976 (+) True G29977
TU40157 lncRNA upstream 383210 61908703 ~ 61917624 (+) False G29963
TU40359 lncRNA downstream 21358 62324517 ~ 62356704 (+) True G30105
TU40364 lncRNA downstream 91761 62394920 ~ 62395161 (+) True G30110
TU40383 lncRNA downstream 258719 62561878 ~ 62562080 (+) True G30122
TU40386 lncRNA downstream 284564 62587723 ~ 62588056 (+) True G30125
TU40391 lncRNA downstream 346205 62649364 ~ 62651937 (+) True G30130
XM_007233016.3 mRNA upstream 310170 61984639 ~ 61990664 (+) True LOC103029839
XM_022664187.1 mRNA upstream 317375 61950471 ~ 61983459 (+) True LOC103031223
XM_007233019.2 mRNA upstream 317376 61950471 ~ 61983458 (+) False LOC103031223
XM_007238760.3 mRNA upstream 365133 61926080 ~ 61935701 (+) False LOC103046322
XM_007238741.3 mRNA upstream 596006 61697476 ~ 61704828 (+) False l3hypdh
XM_007257006.3 mRNA downstream 488589 62791748 ~ 62793588 (+) True LOC103033766
XM_022678415.1 mRNA downstream 536061 62839220 ~ 62853288 (+) True LOC103045797
XM_007257008.2 mRNA downstream 565952 62869111 ~ 62885298 (+) True LOC103034413
XM_015607799.2 mRNA downstream 585709 62888868 ~ 62907516 (+) True LOC103046101
XM_007257051.3 mRNA downstream 605932 62909091 ~ 62925805 (+) True LOC103046397
TU40175 other upstream 364751 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 603963 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 607550 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 1857327 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 2702593 59590989 ~ 59598241 (+) False nme6
TU40444 other downstream 536076 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 1032575 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 1032575 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 1032575 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 1032575 63335734 ~ 63345693 (+) False G30362

Expression Profile