RNA id: TU40364


Basic Information

Item Value
RNA id TU40364
length 242
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G30110
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62394920 ~ 62395161 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgatacaagtgatctgtaatacaccacattaggcactaatggtcaaatttaaataatttaattaagatatatatgtaatgccatctagtggctttttttggtagcagcagtgtgcactattaaaacagcaatgtgcaacataacaaaataaataataaaaaaaatacaggaacagtcatgtacaaaataatagaacaattagagccttaacaaactgaactctatcctactataacagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40359 lncRNA upstream 38216 62324517 ~ 62356704 (+) True G30105
TU40338 lncRNA upstream 91761 62300834 ~ 62303159 (+) False G30097
TU40343 lncRNA upstream 91761 62300834 ~ 62303159 (+) True G30097
TU40344 lncRNA upstream 91761 62300834 ~ 62303159 (+) False G30097
TU40273 lncRNA upstream 302920 62047612 ~ 62092000 (+) True G30042
TU40383 lncRNA downstream 166717 62561878 ~ 62562080 (+) True G30122
TU40386 lncRNA downstream 192562 62587723 ~ 62588056 (+) True G30125
TU40391 lncRNA downstream 254203 62649364 ~ 62651937 (+) True G30130
TU40399 lncRNA downstream 342406 62737567 ~ 62738912 (+) True G30138
TU40437 lncRNA downstream 408430 62803591 ~ 62804754 (+) True G30168
XM_007233016.3 mRNA upstream 404256 61984639 ~ 61990664 (+) True LOC103029839
XM_022664187.1 mRNA upstream 411461 61950471 ~ 61983459 (+) True LOC103031223
XM_007233019.2 mRNA upstream 411462 61950471 ~ 61983458 (+) False LOC103031223
XM_007238760.3 mRNA upstream 459219 61926080 ~ 61935701 (+) False LOC103046322
XM_007238741.3 mRNA upstream 690092 61697476 ~ 61704828 (+) False l3hypdh
XM_007257006.3 mRNA downstream 396587 62791748 ~ 62793588 (+) True LOC103033766
XM_022678415.1 mRNA downstream 444059 62839220 ~ 62853288 (+) True LOC103045797
XM_007257008.2 mRNA downstream 473950 62869111 ~ 62885298 (+) True LOC103034413
XM_015607799.2 mRNA downstream 493707 62888868 ~ 62907516 (+) True LOC103046101
XM_007257051.3 mRNA downstream 513930 62909091 ~ 62925805 (+) True LOC103046397
TU40175 other upstream 458837 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 698049 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 701636 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 1951413 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 2796679 59590989 ~ 59598241 (+) False nme6
TU40444 other downstream 444074 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 940573 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 940573 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 940573 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 940573 63335734 ~ 63345693 (+) False G30362

Expression Profile