RNA id: TU40405


Basic Information

Item Value
RNA id TU40405
length 1855
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G30141
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62737207 ~ 62744288 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tTGTGGAAGATTATAAAATAACAAGATTAGCTTACAATAATCATGATAGCCAAAATCTTAACCTATGATTTcttaaactatgattaaaacacatataagccttaactatgattaaaacacatattataCAAATAGATCTATGAAAGCTATAAATCTATATTCTACTAATCATTAATCACTGAATCAAGAGTTAGTCACTAAAACCACACGTACACACAGTTATTATTTGATTCATAAAATCAGCAATGACATTTGAATGGCCCAACCGAGAAAAACACGCTTCCTCTTTTGCTGGTAAACATCTTAAGGTTACAGAGGCTAGCAGACTAAAAGAGTTCCTCTTTTACTCCTGGGCTCTAAGGAGTTCCTCTTTTACTCCTACGCTCTAGGAACATAGGAGAGTTAGATTAAAAGCCagtaaaaaacatacattttctaGCCTTGCACTTAAAGATTGCGTCTAACAAAATTATACATGCAGCTTCAAGCtatgttaaaatatactaaCTAATTAATCTTACTGTAGGTCTAGTAGAACTAATTAATCTTACTGTAGAATGTAGCAAAATTATTATCAATAAAAGAGAGTATGAATTAAAGAGGAACCGTGCCTTGTTGACCTTAAGACATGTCGCAAAGGGGAGAAATGATTCTCCCTTGTCACCTTGGCAAGGGAAGTTGACCACCTACTATTTCTCAGAAGCAAAGGTTAAGACAACTTTCAAGTTCCTCAGAAGTCTGGAAAAATGAAGTAAACAATATGATATACCATATTTGGAAGGATAGCATAAAAatcagaaaccacctagcaactaggTACGTCACAAAAGGGTATACGTCACAAAAGGGTATAAAGAATGGAGTCAGAAAGGCCGAGGTTCAGAAGAACTAGGATGCATGCCTGTAATgttcttcccagatctgaaatgttcttcccagatctgaaatAAATCATACTTGTTCACTCTCAATCTCCGTGTCGTCTGAATCCTTGGATCAACGAACATGCAACACAAAAAGCTAAGACAGCTTTTTCTACAATTTGGTGACCTTCCGACGTGATCCAGGGTTTCGGCCGGCGAGGACCAGCTGACAGACTTCATCACTCTTCTGGGCCCATCCTAAACAGGTACAGAACACACGGGAGCAGACGCAAGAGGAGGACAACCCCCCCGAGTTGGCCATAACTCCGTGGGTATACCTGAGAGTCATAAAGCGGAAGTGGTCGGAACCCAGGTGGACAGGCCCATTCCGGGTGGCGGAGAGGACAAGCCACACAGTCCGGCTGGACGGCAAAGGCACCTCCTGGTATCATCTCTCCCAGTGTCGGCCTGCTGATCAACCACAAGCCAAGATAACCCGATCAGAAGAGGCAGAAAAGGAGGCCTCAACCAACATAGGGGCAGAATAATCCCCTGAGGCCAGGGGCACGTCGAGGGTAGTCTACCCCTCGCCTCCAGCGCAGATCAACAAGTGCAACCCAGGGCACCAACCTGCGCCATCTAAACTACCACCTTGAGACTCCCTGGGGAGTTGAAGAACTGAACATTTACACctttacatatacacatataggGTTATAATCAACTATTTACTCATTAGGGGGAACACACTTGTTTTTGCTATGGCATGGTATGGCAGACGGGGTGGGGGAAGGAATGAAAATAGACTAAGCTGGTTAAATCTACAGATGGGATTGATTCCAACATGGTTGAAAGTACTATTGGTAATAGTGGTGGTAATAGTGGTGGTTGGCATGATCTGTGTAGAGATAGCGATCCGGAGAAAAGCTGAACCAACTAGTAAGAACAATGGCACGACAGCTGTAGACCCTACAACTAACTACACCACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40334 lncRNA downstream 476881 62260122 ~ 62260326 (-) True G30093
TU40322 lncRNA downstream 500613 62232928 ~ 62236594 (-) True G30083
TU40320 lncRNA downstream 501420 62233818 ~ 62235787 (-) True G30081
TU40303 lncRNA downstream 558774 62178192 ~ 62178433 (-) True G30066
TU40295 lncRNA downstream 626738 62110268 ~ 62110469 (-) True G30058
TU40472 lncRNA upstream 94846 62839134 ~ 62843134 (-) True G30196
TU40512 lncRNA upstream 182626 62926914 ~ 62929726 (-) True G30229
TU40515 lncRNA upstream 186830 62931118 ~ 62931764 (-) True G30231
TU40531 lncRNA upstream 222161 62966449 ~ 62967328 (-) True G30247
TU40594 lncRNA upstream 273411 63017699 ~ 63018729 (-) True G30288
XM_007233018.3 mRNA downstream 374947 62301147 ~ 62362260 (-) True LOC103030680
XM_022668152.1 mRNA downstream 522541 62213160 ~ 62214666 (-) False LOC111191939
XM_022668148.1 mRNA downstream 522552 62213160 ~ 62214655 (-) True LOC111191939
XM_007233017.3 mRNA downstream 679344 62046691 ~ 62057863 (-) True LOC103030167
XM_022664205.1 mRNA downstream 711550 62009807 ~ 62025657 (-) True LOC103031849
XM_007257007.3 mRNA upstream 54331 62798619 ~ 62817748 (-) True LOC103034091
XM_007257013.3 mRNA upstream 198785 62943073 ~ 62962918 (-) True b4galt6
XM_022664256.1 mRNA upstream 235024 62979312 ~ 63007981 (-) True LOC103046711
XM_007257016.2 mRNA upstream 269950 63014238 ~ 63065232 (-) False trappc8
XM_007257015.2 mRNA upstream 269950 63014238 ~ 63065232 (-) False trappc8
XR_002649101.1 other downstream 849319 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 2367593 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 2575183 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 3298909 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 3802418 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 465993 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 465993 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 465993 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 585756 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 689504 63433792 ~ 63465756 (-) False usp46

Expression Profile