RNA id: TU40436


Basic Information

Item Value
RNA id TU40436
length 315
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC103045797
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62821743 ~ 62853288 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaaaaaaaAACAGAGAAAGTGGAGGTGATGAGAATTAAAGCAACTGATCTGGACGAGCAGGGCACCGACAACTGGCAAGCCAAGTTCAATATTGTCTCAGGCAATGAAGGGGGCCATTTCAGCATTTACACTGATCCGAACACCAACGAGGGAGTCCTGATGCTTGACAaggttcttattttttttcttcaatttttttgttattaaggGTATAATTGCTTTGAATACAGTAATttgtaggggtgtcacgatctcgatattttatcgaaatcgaatcgaaatgaggtcacgatctcgagtatcgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40437 lncRNA upstream 16989 62803591 ~ 62804754 (+) True G30168
TU40399 lncRNA upstream 82831 62737567 ~ 62738912 (+) True G30138
TU40391 lncRNA upstream 169806 62649364 ~ 62651937 (+) True G30130
TU40386 lncRNA upstream 233687 62587723 ~ 62588056 (+) True G30125
TU40383 lncRNA upstream 259663 62561878 ~ 62562080 (+) True G30122
TU40501 lncRNA downstream 84367 62928802 ~ 62929726 (+) False LOC103035278
TU40572 lncRNA downstream 272427 63116862 ~ 63117415 (+) True G30280
TU40631 lncRNA downstream 294863 63139298 ~ 63142668 (+) True G30311
TU40634 lncRNA downstream 305231 63149666 ~ 63150215 (+) True G30314
TU40658 lncRNA downstream 419515 63263950 ~ 63288134 (+) True G30335
XM_007257006.3 mRNA upstream 28155 62791748 ~ 62793588 (+) True LOC103033766
XM_007233016.3 mRNA upstream 831079 61984639 ~ 61990664 (+) True LOC103029839
XM_022664187.1 mRNA upstream 838284 61950471 ~ 61983459 (+) True LOC103031223
XM_007233019.2 mRNA upstream 838285 61950471 ~ 61983458 (+) False LOC103031223
XM_007238760.3 mRNA upstream 886042 61926080 ~ 61935701 (+) False LOC103046322
XM_007257008.2 mRNA downstream 24676 62869111 ~ 62885298 (+) True LOC103034413
XM_015607799.2 mRNA downstream 44433 62888868 ~ 62907516 (+) True LOC103046101
XM_007257051.3 mRNA downstream 64656 62909091 ~ 62925805 (+) True LOC103046397
XM_022664239.1 mRNA downstream 73661 62918096 ~ 62925805 (+) False LOC103046397
XM_022678418.1 mRNA downstream 81583 62926018 ~ 62931133 (+) True LOC103035278
TU40175 other upstream 885660 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1124872 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1128459 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2378236 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 3223502 59590989 ~ 59598241 (+) False nme6
TU40713 other downstream 491299 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 491299 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 491299 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 491299 63335734 ~ 63345693 (+) False G30362
TU40712 other downstream 491492 63335927 ~ 63345693 (+) False G30362

Expression Profile