RNA id: XM_022678415.1


Basic Information

Item Value
RNA id XM_022678415.1
length 4403
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC103045797
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62821743 ~ 62853288 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATCAGTGATCGCTCTCTCTGGGGCTGGTAGTAGGTGGTGATAGTCCGCTGCTCGGCTCGGGGGAGTAAAGTTGTGTGTGATTGCCGCAGGAGCTCCGCGGCTCTCCCGGATATGGCTCGGTCTGTGTGCGCAGCGCTGTGTCTCCTCTGTTTCGCTTTAACGCATGTATTTGAATCTGAAGCCAGAAAGGAGTCCTCTTTAGTTCTTCGCAGGCATAAGAGGGAATGGATTGTTCCTCCACAAGTTCTGGAGGAGAATGTGGACTACACCAAGAAGGAATTCATTGCTAGAattcgCTCAGACAAGGATGATGGACAAAAAAACTTAGTGAGATATGCTCTAAGAGGAGTTGGAGTGGATCAGTCACCCTTCAACCTGTTTGTAGTGAATCCTGACAATGGCAATGTTCGGATAACTGGACTTCTTGATCGAGAAAGTATCCCTCAATTCAATcTTTCTGGAGTTGCAACATTTATTAATGGCACAGTGGCAGAGAATGATATTCAGTTGAGGATAAAGGTGAAAGATCAGAATGACAATGCACCCATATTCCCCCCCAGTATTTCACCAGGCTCTGTGTATGAACTCAGCCCAGTAGgTACCTCTGTAATGAGAATAACAGCCACAGATGCTGATGAACCTGGGAACCCCAACTCTCAGATTCGCTACGAAATCATCAACCAAGACCCTGCAGGGGCAGCAATGTTTAGGATCGCTCCTAATGGAGATGTTCTTGTAAATGATGCTAACCTAGACAGAGAGGCCAACCCGCAGTACACACTTACTGTAAAAGCTTCAGACCTCAACGGGGCCCCAGGATGCAAATCAGGAACAGCAACATTCAAGATCCAGCTCAAGGATGTAAACGATAATGTCCCAAAACTGGAGAAGGAAGCAGTAAGGGagGAAACAACAGAGAAAGTGGAGGTGATGAGAATTAAAGCAACTGATCTGGACGAGCAGGGCACCGACAACTGGCAAGCCAAGTTCAATATTGTCTCAGGCAATGAAGGGGGCCATTTCAGCATTTACACTGATCCGAACACCAACGAGGGAGTCCTGATGCTTGACAaggttcttattttttttcttcaattttttttacccaaAGTGAAAGCAATCCCCATTTCTGAAGATGGCAAGACGTTCGACGTAACAAAACTCATTGCTACATACCCTGCTATTGATGGGGATACAAAGTTACCTGCTGAGAACGTGAGaTATGCCAAAGGCCTTGACCCAGGAAACTGGCTGAGCATTGATGAGAAAAGTGAAATTAGACTGAACAAACTTCCAGACCGGGAGTCACCACACTTGGTCAATGGAACATACACAGCTAAAGTCCTGTGTATCAGCCAGGATGCACCCTATACAACAGCTACAGGCACCATCGCCATTCAGGTCGAGGACTTTAATGACCACTGCCCTACTCTTACCACCAATGTGCAGACTATGTGCACCATCCAGGAAGCTATATATGTCACTGCAGTGGACGAAGATGCTCCTCCTAATGCAGCTCCTTTCACTTTCAGCATTGTCCCAGAAAAGACCAAGGGAAAATGGAGTGTGGAGCACTTAAATGACACGACAGCCATCTTAAGATCCCATGAGCCTCTGTGGCCTGGTCCTCGGGAAGTGACCGTGGAGGTGCGTGACGAGCAAGGGTTGTCCTGTCCAGAACCACAGGTGCTAAAGTTGGACGTGTGCAGCTGTGATAAGAATGGCCTGTGTGGTGTACGTGGAGCACAACAGAAGGGAGCAGTTCTTGGTAAAGCTGGAATTGGCTTGCTCCTCCTGGGTCTCCTCATGCTTTTGCttatcccacttctgctgctgttctgtCAGTGTGGAGCAGCTGGCATGGGAGGAGCCTTTGCAGAGATGCCCTTTGATACTAAAGAGCACCTGATTGCCTACCATACAGAAGGCCAAGGAGAAGACAGGGATGTACCCTTACACCTTGCTGGACCAGAGGTTGATTCTGGTGGCCTGGTCAACATGGGCACTAAAGGCAGCTATGCAGCTGCTGCTTTTGGAGCTGGTATGgcaggagcagcaggaggagcagGAGCAGGTTACATGGCATCTACCTTTTCGGGAGGGGGAGGCTATCAGATGGAGATGACCACAATGGACCATGGGATGAGTGCTGCTGGTCTAGGAATGATGAGAGAGGAGTTTGATGATGGAATGGCCCTTTCAGGAGAGTATTTGAATCAGTACTATTCACAAAAGAGTATGGAGCTGGATGCCACGGCCAAAAACTCCCTGCTGATGTATAACTACGAAGGTCAAGGTTCTCCTGTTGGTTCCATTGGCTGCTGCAGTCTCCTCGAATCGGACAACGATCTGGAGTTTCTTAACAACCTTGGGCCTAAGTTCACCACTCTCGCTGAGATATGTGGAGGCACAAAGTTCACAAAAGAGGTTGTAGCCCCTCCAGCTGCCGCTCCACCTCCATCTGTTCCTAAACCGATTGTGGAACGCCCAAAAGCGGTCTCCATTGAAACCCACCGTGTCAACACCGTTAATGTTCCTCCCAAACCTGCGGCATCTTCCTCTGTGCATACAGTCGAGAATGTAATGGTTACAAACAGCCGTGCCTCAGTAGCAGCTGACGTAAAGCCCGCCACAACTCTGATTAATGTGAAGCCCAGCCAGACTCTGATTGACGTCCAGCCAGCCCAGACTCTGATGGTTCAGCAGCAGCCCATGTACTACGTGGTGGAGCCGCAAGTATCCAACACCATGCTGTTGGCTGAGAGGCCTACTGTTGGATTGGGGCAGAACGTGTACATGCTGAACGGCGCTCCAATGGCAGAGAGAGTTCTAGTGCAGGGTGCTGTTCCAGCACAGGGCACCATTGGAGGTGGCAACAGAGTGATGCTGCTGGAGACAGGCAGAGGATCCACCCAGGCTCTAAACACAGGCTTGCTGCAGTCGGCTAACTTGTCGGGATCGCAGCTACTGCTGGTGGACGGGGCTGCACAAGGTGGACAGGTCCTCCAGGGGACGCTGAATAGAGGTGGATTAGCTGGCTCTCAAGGCCTGTTGCTCGTAGATGGGCAGTCAGGTCCCATGCTGCAAGGGTCTCTCCAAAGAGGTGTTGCAACAAGCGGATCTCAGAATATGCTGTTTATGGAGGCACAGGGTGGGTCATCTGGAGTTTTTCATGGGTTGATGCAGAGGGGCATGACCTCCAGCGCAGGGTCACAGAGTGGAACTGTTGGATTGAACACAGGCTCAGTCCAAATAAGCGGAGTTCCATCTACACGAAAAGTCGTCATCCAAGAGAAGAAGGTTGTATCAACTCAGCAAAGCTCTCTGTAAAAACGAATGGATAATAATGGATAATCTTCAACCTGAGTGTAGTCTACAGTGATGCCCCCCCATTATGCTATGCACATTACAAATGTTTCCCAAGTAACATAACATTTGTTTCgcatgtatgtatttttgtttgtttgttttacatttgtTATGAACTTGGGtagtgtactttttaatatactatGTAGTGTCATATTTCAAATAACAGTCCCTTATGAAGATCCTTTGCCATTAGTTACTTAACACTTTATTTAGGCATTACCTATCTTCCTTCAGAAACTTCAGTGTTTCAGCCCTTGTGTCTGTTTTAACATCCACTTGAAATTGATCCAAAGTAATAAGGTGTTTTGTGGAAAATAGCTTGAGGCATAAAAACTACTACACAGATATattggtgtgagtgtgtgaaccTGCTATGACTACTACACTTTTATAGCTGTgtataactttatttttgtaaaatgtaaactgCTTTAAAAGTAAGGTCAAAAAGTTAAGGTCATTTAGTGTGaatatttgaaaataatttGTACTTTGTTCTCTTTGCGCTTTGCACTGCTTTTAACAAGATGGAACCTAAATATCTGGATCCCAACGGCTGAAGTTATTTACACACTGCAGTCACTAATTACACTAAGGTGAAACGATGCTAAACACTGAACTCTAAACCAGGATTCAAATTCTGGAACACTGTTACATGCTTTCATGTGTTTTTGTGCTTGTGATTAATAAgaaatatttgcattttgctAGGTACGTTGTGAATATTGTTGTACaaattttgactttttttggcAATAACTTTTTAAGGGCTTTTGCTGACTTgaacttttagttttttagttttaaatttagaGTTATAGCagctataaatattttttttctgttttgaaagATTGAATGTACTCTGCTATAaactgccatttttttttttttttttagctagtgGGCCAAAATTCTGGATCtatctgtttttatatttgggTATGGTACTGGAATGTCGGCAGTTATTTTGTCTTGTTTACCGAAGACTGGAATaccaaaaattaataaaaaaagattaaaaaagca

Function

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0002159 desmosome assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40437 lncRNA upstream 34466 62803591 ~ 62804754 (+) True G30168
TU40399 lncRNA upstream 100308 62737567 ~ 62738912 (+) True G30138
TU40391 lncRNA upstream 187283 62649364 ~ 62651937 (+) True G30130
TU40386 lncRNA upstream 251164 62587723 ~ 62588056 (+) True G30125
TU40383 lncRNA upstream 277140 62561878 ~ 62562080 (+) True G30122
TU40501 lncRNA downstream 75514 62928802 ~ 62929726 (+) False LOC103035278
TU40572 lncRNA downstream 263574 63116862 ~ 63117415 (+) True G30280
TU40631 lncRNA downstream 286010 63139298 ~ 63142668 (+) True G30311
TU40634 lncRNA downstream 296378 63149666 ~ 63150215 (+) True G30314
TU40658 lncRNA downstream 410662 63263950 ~ 63288134 (+) True G30335
XM_007257006.3 mRNA upstream 45632 62791748 ~ 62793588 (+) True LOC103033766
XM_007233016.3 mRNA upstream 848556 61984639 ~ 61990664 (+) True LOC103029839
XM_022664187.1 mRNA upstream 855761 61950471 ~ 61983459 (+) True LOC103031223
XM_007233019.2 mRNA upstream 855762 61950471 ~ 61983458 (+) False LOC103031223
XM_007238760.3 mRNA upstream 903519 61926080 ~ 61935701 (+) False LOC103046322
XM_007257008.2 mRNA downstream 15823 62869111 ~ 62885298 (+) True LOC103034413
XM_015607799.2 mRNA downstream 35580 62888868 ~ 62907516 (+) True LOC103046101
XM_007257051.3 mRNA downstream 55803 62909091 ~ 62925805 (+) True LOC103046397
XM_022664239.1 mRNA downstream 64808 62918096 ~ 62925805 (+) False LOC103046397
XM_022678418.1 mRNA downstream 72730 62926018 ~ 62931133 (+) True LOC103035278
TU40175 other upstream 903137 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1142349 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1145936 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2395713 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 3240979 59590989 ~ 59598241 (+) False nme6
TU40713 other downstream 482446 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 482446 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 482446 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 482446 63335734 ~ 63345693 (+) False G30362
TU40712 other downstream 482639 63335927 ~ 63345693 (+) False G30362

Expression Profile