RNA id: TU40437


Basic Information

Item Value
RNA id TU40437
length 513
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G30168
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62803591 ~ 62804754 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGCAGGAGAAGCAGCAGGGCCAGCAGCATGGCGAGAACGGCCCACACTCCCAGTTTGGCAGAAATCTTCTGAGCTGCACACTCTCCATCCCTTACACATGTGCACACTTGGATATTTACAGTCTGCTCTGTCCCTTCACCTTGGAGGTCCTTCACAATCAAGGGGACCTTGTACTGGCCATTCGGCAAGTCCTCGGCCTGCTCCAGGACCACTGAGGTACCTGGCTTGGGATCCTTGATCTTCCATTTCCCATCATTTCCTGGCCCTAATTCAAAGGTAAAAGGGCCAGCATACGGAGATTTATCAGAGTCCACAGCTTCAACGGTCGTAGAGctcctttgattttcttttgaGCACACCGTCCGGTCTGGTACTGGGATCACCGGGTAGTTATCATTTACATCCTCAATCAGGATCACGACTGTACCTGTACCAGTCTTCTGACCTAGGAAATGGGAAGGATTGAACATGatgtcattttttattacaagCATCATTGTTATTTCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40399 lncRNA upstream 64679 62737567 ~ 62738912 (+) True G30138
TU40391 lncRNA upstream 151654 62649364 ~ 62651937 (+) True G30130
TU40386 lncRNA upstream 215535 62587723 ~ 62588056 (+) True G30125
TU40383 lncRNA upstream 241511 62561878 ~ 62562080 (+) True G30122
TU40364 lncRNA upstream 408430 62394920 ~ 62395161 (+) True G30110
TU40436 lncRNA downstream 16989 62821743 ~ 62844435 (+) False LOC103045797
TU40501 lncRNA downstream 124048 62928802 ~ 62929726 (+) False LOC103035278
TU40572 lncRNA downstream 312108 63116862 ~ 63117415 (+) True G30280
TU40631 lncRNA downstream 334544 63139298 ~ 63142668 (+) True G30311
TU40634 lncRNA downstream 344912 63149666 ~ 63150215 (+) True G30314
XM_007257006.3 mRNA upstream 10003 62791748 ~ 62793588 (+) True LOC103033766
XM_007233016.3 mRNA upstream 812927 61984639 ~ 61990664 (+) True LOC103029839
XM_022664187.1 mRNA upstream 820132 61950471 ~ 61983459 (+) True LOC103031223
XM_007233019.2 mRNA upstream 820133 61950471 ~ 61983458 (+) False LOC103031223
XM_007238760.3 mRNA upstream 867890 61926080 ~ 61935701 (+) False LOC103046322
XM_022678415.1 mRNA downstream 34466 62839220 ~ 62853288 (+) True LOC103045797
XM_007257008.2 mRNA downstream 64357 62869111 ~ 62885298 (+) True LOC103034413
XM_015607799.2 mRNA downstream 84114 62888868 ~ 62907516 (+) True LOC103046101
XM_007257051.3 mRNA downstream 104337 62909091 ~ 62925805 (+) True LOC103046397
XM_022664239.1 mRNA downstream 113342 62918096 ~ 62925805 (+) False LOC103046397
TU40175 other upstream 867508 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1106720 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1110307 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2360084 60430861 ~ 60443507 (+) True LOC111190190
TU39573 other upstream 3205350 59590989 ~ 59598241 (+) False nme6
TU40444 other downstream 34481 62839235 ~ 62843043 (+) False LOC103045797
TU40713 other downstream 530980 63335734 ~ 63345693 (+) True G30362
TU40718 other downstream 530980 63335734 ~ 63345693 (+) False G30362
TU40730 other downstream 530980 63335734 ~ 63345693 (+) False G30362
TU40731 other downstream 530980 63335734 ~ 63345693 (+) False G30362

Expression Profile