RNA id: TU40512


Basic Information

Item Value
RNA id TU40512
length 560
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G30229
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62926914 ~ 62929726 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTTTTTTTGACTTGAGGCTGGTCAATTTATATTCTTCTCCAGTATGAATTGCATCACTGTCCACTGCCAAACTGATGTCTTCTAACCAGTTGACACCcacattagatagatagatagatagatactttatttatcccgaaggaaatttaggaacaaGAACCATTGACCATTGGTGTGTCCTGTGGTATCTCTATGCCTGTATGCCTCTATGCCTCTATCTCTATGCCTGAATGAAGTCCATGTCCAACAATAAGATGTTAATGAGTATCTTGTTTTGGTCTTTCAACATTTACAATTAAATCCCCAACATCTTCCTTTGAGTTAAAAGCTGCATCTTCCTGATTTGAGTCAGAAGCTTCATCTTACTTATTTGAGTCAGAAGCTACATCCTCCTTTGCGTCAGAAGCTACATCTTCTTTTGAGTCAGAAGCTACATCTTCCTTTGAGTCACAAGCTACATCTTCCTGATTTGAGTCAGAAGCTTCATCTTCCTGATTTGAGTCAGAAGCTGCATCTTCCTTTGAGTCAGAAGCTGCATCTTCCTTTGAGTCAGAAGCT

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40472 lncRNA downstream 83780 62839134 ~ 62843134 (-) True G30196
TU40418 lncRNA downstream 175379 62718293 ~ 62751535 (-) True G30150
TU40405 lncRNA downstream 182626 62737207 ~ 62744288 (-) True G30141
TU40334 lncRNA downstream 666588 62260122 ~ 62260326 (-) True G30093
TU40322 lncRNA downstream 690320 62232928 ~ 62236594 (-) True G30083
TU40515 lncRNA upstream 1392 62931118 ~ 62931764 (-) True G30231
TU40531 lncRNA upstream 36723 62966449 ~ 62967328 (-) True G30247
TU40594 lncRNA upstream 87973 63017699 ~ 63018729 (-) True G30288
TU40597 lncRNA upstream 136803 63066529 ~ 63069341 (-) True G30291
TU40608 lncRNA upstream 154601 63084327 ~ 63086956 (-) True G30296
XM_007257007.3 mRNA downstream 109166 62798619 ~ 62817748 (-) True LOC103034091
XM_007233018.3 mRNA downstream 564654 62301147 ~ 62362260 (-) True LOC103030680
XM_022668152.1 mRNA downstream 712248 62213160 ~ 62214666 (-) False LOC111191939
XM_022668148.1 mRNA downstream 712259 62213160 ~ 62214655 (-) True LOC111191939
XM_007233017.3 mRNA downstream 869051 62046691 ~ 62057863 (-) True LOC103030167
XM_007257013.3 mRNA upstream 13347 62943073 ~ 62962918 (-) True b4galt6
XM_022664256.1 mRNA upstream 49586 62979312 ~ 63007981 (-) True LOC103046711
XM_007257016.2 mRNA upstream 84512 63014238 ~ 63065232 (-) False trappc8
XM_007257015.2 mRNA upstream 84512 63014238 ~ 63065232 (-) False trappc8
XM_007257014.2 mRNA upstream 84512 63014238 ~ 63065232 (-) True trappc8
XR_002649101.1 other downstream 1039026 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 2557300 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 2764890 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 3488616 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 3992125 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 280555 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 280555 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 280555 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 400318 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 504066 63433792 ~ 63465756 (-) False usp46

Expression Profile