RNA id: TU40712


Basic Information

Item Value
RNA id TU40712
length 5845
RNA type TUCP
GC content 0.38
exon number 3
gene id G30362
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63335734 ~ 63345693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTAGTAACTTAgataaaagtaaattaataacattttacaaatgtgcatatatatatataaatacatatcaaATGTTGAAACGCGAAATCAGTCTGTTCGAGTCTGTTTAAACATCAGTACGATATTTGTATCTGAGGGGTGAGATACTCTTGGCACTCAGGCTCTCAGCAGTTTCTGCAGCAGTAAAATCTGTGTGGATCGGAGTGTCTGCTGTTCCTGTAGAAATTCCATGGAAAATGTTCCTTTTGTAGACTGGGAATGTCTCTTCATTGTGATCTGACGGTCTTTGTACGGTGTAAGAGTGGGTGGTCAACTTGAACCCATCCATGGCTCTTCTTTTCTGCGTAAACAGTAATCGCCTCCGCTCCTGCTTCTCCCGAGCTTGAGAGCTGTCTCGGAGATACTCTCTGGCATCATCCTTTCCTAAGGATGCTGGGGATGAATCTTGTGCATTTGAATCTTCATCATCATCGAAGTGGGAATGTGAGATACTCTGGCTGAATCGGGGTTGTGGTGAAGTGAATGATTGGTCAGTTTGACCGTATGGCTCTGAATTAGAAAAGAAGAGAGTTCTCTTAGGCCTGGAGATTTGGTCTAGCACGCTTGTTTCTGTGGCTACTGTCATCTCAGGTTTAGGCTCAGATTGTGAGAACTGCAGAGATCTTTGTATTTTTGGTATGTCATCAAGAGGTACACTTATTCCCCCCAAGAAACTGTCTTTGTCGCCGCTTGGCTTCACTTCAAACTGTTGTGTAGATAGTCTGTCTAAATCCTGGGTTGGAGACTGTCCTGACTGCTGAGATGCAGAATGTGTGAAGTGAATGTATTTCTTTACTTTTGGTATTCCATCAGCAGAGACATCAATTGACCAAAAGATACTGTGTTCTTCAGCAGTTGGTTTAACACCATCTACAGATGATGAGCTATTCCTCTGTGCTCCTGTGCCTGTACTTGGTAGCAGAGACTGAGAAAGAGGTTCAGATTGTGAGAACTGGATGTATCTCTTCACTTTTGGGACTCCATCAAAAGATGTGCCTTCTTGCTCAAAGAAACTGCCTCCCTTGGTCTGACTGAGCCCTTCTTCAGACTGTACTGTAGTCACAAACTTCGGTGGGATCCTTTCTGAATCGAACACTGTTGATGGAGATTCAGCTGAAGGTTGAACTTCAGTCTGTGAAAACTGAATGTATCTTTGTACTTTTGGCACTCCATCAAAAGATGCTCCTATTTGTCCAAAGAAACCGTCTTCCTTAGTGGTTGGACTGAACCCATTCTCAGATGTGGAACCAGGTTGAACTTCAGATTGTGTAAACTCAATGTATCTCTGTATCCTTGGAACGTCATCAATGGATGTACCTATTTGCTCAAAGAAATTCTGATCCTTTGTGGTTGGACTCTGGCTATTCTTGAATGATGAATCATATTTCCCAGACTGGGTTTTTGGCACCAAATTTGGTGTgattgtttctgtgtttaatgATGGAGACAAATGTTGGGCCTCTGACTGGGTAAACTGAATATATCTTTTCACTTTTGGCACGCCACCAAAAGATGCTCCAGTTGCTTCAAAGAAATCATCTCTGTCCTCAGATGAAGAAGCGGGTCTCGTAGACTGTGTTGTAGCTCCTATGACTGGTGTGATCTTTTCTGTCTTTAAAGATGCTGATGGGGTCACAGTTGAAGGCCAAGGCTCTGAATGGGAGAACTGAATGTACCTCTTTACTTTTGGCACTCCTTCAATAGGTACTCCAACGACTTCAAAGAAACCGTCTCCATCTACAGATGAAAAACCAGGATTCACAGCCTGGGTTTGTGGTGCCACATTTGGAGTGATTGTTTCTGTCTTTAAAGATGCTGATGGAGTTAAAGGTTGGGCTTCGTGTGGTGTAAATTTAATGTATTGTTTCACTTTTGGTACTCCATCAATAAAAGCTTCACTTGCTCCAAAGAAGACTTCATCATCAGATGAAGAATCAGGTCTGATAGACTGTGTTTTATTCCCTATCACTGGTGTgaacttttctgtttttaaagttgAAGGTTGAGGCTCTGAATGTGAGAATTGGATGTATCTCTTCACTTTTGGCACTCCTTCAATAGGTGTTCCTGTTTGTCCAAAGAAAGTGACTCCAAACACAGATGAAGGATCAGGACTCACAGACTGGGTTTTTGGCACTGACTGTGGTTTgattgtttctgtgtttaaagAGGTTGATGGGGTCAGAGTTGAAGGTTGGCCCTCAGATGGTGAGAACTGAATGTATCTCTTAACTTTTGGCACTTCATCAACAGATGCACCTATTTGTCCAAAGAAATTGTCTCTGTCCTCAGACGAAGTATCAGGTCTTAGGGATTGTGTTTGGGTTCCTAACACTGGTGTGATCTTTTCTGTCTTTAAAGATGCTGATGGGGACAGACTTGAAGGTTGAGGCCCAGTCTCTGAGAACTGAATGTATCTCTTCACTTTTGGCACTTCATCAATAGATGCACCTATTTGTCCAAAAAAAGTGTCTCTGTCTTTAAATGAATCGGGGCTCATAGACTGTGTTGTAGTTCCTACCACTGGTGTGATCTTTTCTGATTTTAAAGACTTTGATGGAGACAGAGTTAAAGGTTGAGGCTCAGATTGTTTGAACTGAATGTATCTCTTCACTTTTGGCACTTCATTAACAGATGCACCTATTTGTCCAAAGAAATCGTCTCTGTCCTCAGACGAAGCATCGGGTCTCATCAATTGTGTTTGGGTTCCTACCACTGGTGTGACCTTTTCTGTCTTTAAAGATGTTGATGGGGACAGAGTTGAAGGTTGAGGCTCAGTCTCTGAGAACTTAATGTATCCCTTCACTTTGGGCACTTCATCAACAGATGCACCTATTTGTGCAAAGAAATTGTCTTTGTCCTCTGGTGGATAATCAGGTCTCATAGACTGTGTTGTAGTTCCTACCACTGGTGTGATCTTTTCTGTCTTTAAAGATGCTGATGGGGACAGAGTTGAAGGTTGAGGCCCAGTCTCTGAGAACTGAATGTATCTCTTCACTTTTGGCACTTCGTCAATAGATACATCTATTTGTCCAAAGAAACCGTCTCCCTTAGAGGTTGGACTGAACCCATCCTTGGCTGTGGAGCCAGGTTGAACTTCAGATTGTGTAAACTGAAtgtatctctctatctttgGCACTTTGTCAAGAGATGCACCTATTTGCTCAAAGAAATGATTTTCCTTTGTAGTTGAGCTGTGGTTATCCTGAAACCCAGACTGTGTGTTTGGCACCAAATTTGGTGTgattgtttctgtgtttattggTGTTGATGGAGATGAAGGTTGGTCCTCAAATGGTTTGAACTGAATGTATCTTTTCACTTTTGGCACTTCACCAACAGATGCACCTATTTGTCCAAAGAAACTGTCTTCGTCCTCAGATGAAGAATCTGGTCTCCTAGACTGTGTATTAGACCCTAACACTGGTTTGATTGTTTCTGTCTTCAAAGATGTTGGGGGAGACAGAGCTGAAGGTTGAGGCTCAGTCTCTGAGAACTGAATGTATTTTGTCACCTTTGGCACTTCATCAACAGATGCTCCTATTTGCTGGAAGAAGTTGTCTTCTTTTGAGGATGGGCTGTGTTCATCCCTAAACGATGAATCATATGTCTCAGACTGGGTTTTTGGCACCAGATTTGGTGTgattgtttctgtgtttaaagATGCTGATGGAGAAAGAGGTTGAAGATTAGATGGTCTGAACTGAATGTATCTCTTTACTTTTGGCACAGCATCAACTGATGCACCTATTTCCCCAAAGAAACTGTCTCCGGTTGGACTGAGCTCATCTTCAGATGACGAATTAGGTCTCACAGATTGTTGGGTTGTAGTTCCTAACACTGGTGTGATCGTTTCTGTCTTTAAAGATGTTGAGGGAGATGAAACTAAAGGTGGAGGCTCAGAATGTGAGAACTGAAGATATCTCTTTACTGTTGGTACTGGATACAAAGTCACATCAAATTTCCCCAAGAAACTTTCTTCAGAGGAGGAATTCAGCTGGGACGACTTTAAATCACATCCTGCCTCAGGTGTCGTTGTAGATCCATGTTGAgttggaggttgaggaacagaGACTGAGAACTGGAGAGATTTTTTCACTTTCGGTAGTTGATCAAAAGTTAGTCCTATTATTTCAAAGAAACTCTGTTCAGAGGAAGGAACCATCTCCTTATGCCTTTCCTCTATATCTGTACTAGTTGAGGAATTGTCAAAGTTGATATTGACGATGCTGCTGGTATTTTGAACTGGAATAACACTCTCGTTAATGACCTCGGGGTCTACTTTTATTTCAAGTTTCCGGGGATAGTCCTCATATTCAGCTTGTGTCTCTTCGTCATCACTGGAGATACTGGCACCTGCTTCATTTGTCTTTGGGACACTGGTAGTCTTTTGGCCAGGCCTATACACAGGGTGCACATGGTATTCAAGAAGTTCTTCTGCGTTAAAATTGCCATTTGAATAATCAGAGAACTCACTAGGGACTGGTGTTACTGTGTCGCTGAAGTCATCATTTCTTGAGTGTGGATCATCATAGGTTTCTGATTCTGCGTATTCCTCTGAGTTGACTGTGTATTCTGTTTGTTCTCCTTCAGTAAGACCACTTTCACTTGAGCTGCAAGACCCTAGGTTGTTAGTTTGTTTATCCACCGACAGCTCCTCCTCAAAAAGTGGAAAATCAAGAACAGCACCCTGTGTAGTTCGGCTGCTTGATCTTGGAGATTCATCAGGGAAAGAAAAGCTCTCGCCACTGTCGTTCCATAAATCTCTGTCCAGATCATCCACATTCTCTTCATTTAGATAAGACAGTGTCCCTGAAAATGGGTCAGTTGTAAATCCCAGTATTGTTGCCTCTGTGTTGTCTGTATAACTTTCCTCATCATCCAGAGTGGTCACTGTCGGAGGATCTACACTTTGCTCTTCAGACTCAATTACTTCATAAATGGACCCCTGTTCTTGGGGCAATCCAGATTCTCTGGATACACTAGAAATCCTCTTCTCTTCTAACTCTATAAAGTCTTCTGGGTCTGGAATAGCTTCCAACTCCACAGCTTCTGTAGTTTCCACACTTGTTCTTGGGTTCTCCTCTCTCAAAGGTAGTTCTTTACTGACGGGTATTGAGCTGCTAGGAATGCTGCTTTCCTTGCCCCTTAAATCCTCCATCTCAACATGAGTTATAACAGTATTAGTCAAGGGTTCCCTGCCATGTGTGTTCTCGTATGATGCTTCAACATCCATATTGTCCTCAGAAGAGCTGTCTGATTTGGTGTCTTCAACTGTGACGTAGTAAGGAATGTTGCCCGCATTGTCATTAACTTCTGTCACTCCGCCAAACGTCACTCTTGATCCCACTCGCACTTCCTGCACAGGTTCATCTGTATCCGAAAATCCCTCGTTGTCATACGGCCTTGGTTGAGCTGAGGAAGTTCTGGAGTTTGCAGACGATGATCTAGAGTCCCTCTTGTTGCGAATCCTTTGCCATAATTTGTCCAAAAATGGCCGTAACACAACACCAAGGATGAAGGCCACGATGAAGGTAATGAAGACGGAAAGGCAGACAGCTAAGACAAACTGGGATTGTTCTACAGCTCGCACGTTCCTCACCATGTTCACATTTTGGGCTTCTCGTCGCTGCCTCGTTTCATAAACTCTTTTACGAACATGTAGATTAAATATGGATACATGCTGCTCCTGGGCTCCTGAGATACAGACATAATGTCCGGCATGCTGCTCTGTGATGTTGCTGATAAAAAGGACCTGTTGATTCTCGGAGACGTGGCCTTGAGGTATCCACCATCTAGTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649739.1 lncRNA upstream 37195 63297863 ~ 63298732 (+) True LOC111191941
TU40658 lncRNA upstream 47793 63263950 ~ 63288134 (+) True G30335
TU40634 lncRNA upstream 185712 63149666 ~ 63150215 (+) True G30314
TU40631 lncRNA upstream 193259 63139298 ~ 63142668 (+) True G30311
TU40572 lncRNA upstream 218512 63116862 ~ 63117415 (+) True G30280
TU40763 lncRNA downstream 88138 63433831 ~ 63435982 (+) True G30383
XR_002649180.1 lncRNA downstream 120550 63466243 ~ 63468751 (+) True LOC103041812
TU40768 lncRNA downstream 120582 63466275 ~ 63468617 (+) False LOC103041812
TU40773 lncRNA downstream 181828 63527521 ~ 63550200 (+) True G30393
TU40942 lncRNA downstream 911421 64257114 ~ 64269674 (+) False kit
XM_022664352.1 mRNA upstream 1059 63318652 ~ 63334868 (+) False dcun1d4
XM_007257029.2 mRNA upstream 1059 63319256 ~ 63334868 (+) False dcun1d4
XM_007257030.3 mRNA upstream 1059 63321555 ~ 63334868 (+) True dcun1d4
XM_007257028.3 mRNA upstream 20970 63307949 ~ 63314957 (+) True ociad2
XM_007257026.2 mRNA upstream 40241 63290134 ~ 63295686 (+) False ociad1
XM_022664370.1 mRNA downstream 19981 63365674 ~ 63379522 (+) False spata18
XM_022664364.1 mRNA downstream 19983 63365676 ~ 63379522 (+) True spata18
XM_007257035.2 mRNA downstream 175852 63521545 ~ 63524944 (+) True rasl11b
XM_022664403.1 mRNA downstream 419076 63764769 ~ 63822100 (+) False fip1l1
XM_022664404.1 mRNA downstream 419076 63764769 ~ 63822100 (+) False fip1l1
TU40444 other upstream 492884 62839235 ~ 62843043 (+) False LOC103045797
TU40175 other upstream 1399844 61926106 ~ 61936083 (+) True LOC103046322
trnad-guc_1 other upstream 1639056 61696800 ~ 61696871 (+) True trnad-guc_1
trnad-guc other upstream 1642643 61693213 ~ 61693284 (+) True trnad-guc
XR_002649037.1 other upstream 2892420 60430861 ~ 60443507 (+) True LOC111190190
trnad-guc_4 other downstream 1727908 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 1728878 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 1729423 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 1752809 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 1753598 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile