RNA id: TU40763


Basic Information

Item Value
RNA id TU40763
length 2114
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G30383
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63433831 ~ 63435982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCACTGTCCAGTCTACATAATAAATCCATTTTACAGCCTTAGAATTCCAGCTCCTTttgagtttaaaaatatataatttctttCTATCAGACATTCTACACATTTTTTATGTACAGTTGCATCTCACacaaataaaagttatttttttcttccatgtTCCAGTTTTCGaggagtgtgtattgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtgtgtgtgtgtgtgtttgcagagaTTTGGCACAAAGTCAGACTTGTGTTTGATCAGTAACATCGAGAGCAGCACACGTTTAGAGCTACAGGAGATGAGGTTTCAGTACCATGATGAGAAGGTATCACATGGAAgtgtatacactacacacactctcttacttcacactcacactgacaaacaaacacagaacaaaGAAAAATTCTTGACAGCTGACTCCCTGCTTTGGGATGTATTTAATCAAAAAGTTTATGTGTATATgtccgccaaaaaaaaaaggggtaaTTTCTGCATAGTCCTTTTAAGCTTCTGTTATTCCACAGTGACGACATAACTGTAGTGCAGGGATGAGCGCTGCATAACTTTTTGAAATTACTATGCCATAAACATGTCATTACAGGACGGTTACGCCCCTTCCCAACATATTAGCTCATTTCAAATACAGTAAGTGTCTTGTTAACCTTACCAGTAAGTGTCTTGACTGATGTTAGCtaatgcactaaatatgctgcTAGTTTTGCGGTATATTTATGTTGTTTCAGTACTTTAAttgttgtaatatttttattttataaaaattcagTCTTGGAAAGTGTTTACTAAACGGCccaatatttttagattttcgTTGTGTCTACTGAATGTataaaattgtaatagTATTTTCTAGAAATTCTGTTTAAAACATCCaatgtttttttcaaatcaCTAAGAATATCATTATAGCAAACATACCTcgccatattgtgataatactTTAGGGCCACATTACCCACTCCTACTCCATATTTTCCTATCTGGAAAGCCATTTCCCTAAACAAAATgggtttaaaaatagacatttatttaaaCCATTCAACAAGAATTGAATAAGGGGTGATTtactttactattattataggGTTTATCTTACACAAACAAGACATTTTAGTGCTGTTATTAGAGAAAGAAAGCCATTTGAAAGCCATGGggattttacataaaacatgcCTTCTGTCTCGAGATTTATGGTAATGTTCATTACAGCTTCCATGATTCCATGTTGGACAAAGCTGTCCATCACAGGAGAGCTTTTTCTAattctattttcattttatacCTGTATCTGCAAACAAAGTGGAAATACTGATTCTAAACTTCTGAACAGTATTAGATCAGTATGACTAGAATATCTAACTGGAGAAAAAGGGGCTGCAAACTAACAAGCAGATTTGTGTGTGAACTCGTGTGCCATGTCACTTGCCATATACTGTACAATTCAAAGTGTCAAACCGGGCTAAATGGATCACAGCTTGAGCTGTGGGAATAGTGTTAATAAGGGTTGTTTTCTGAGAGCAACTTCAGGTTGAGcagaatgctgggaaaaaaatatagagTACAAGAAACTAAGGAGCATCTTTGATCTGCTGTAAAGTCTGACTGCTCTAGCCTGTCGGTGCAGAAGTTTGATTTCTTCACTAGAAGTGCACTCTCTGTGCTCTGTGGATCCCAAAGAGAACATTGATAAGCtatattaaaacaaagttttagGGTCTTGTTCTCACATTACTGGTTTGCTGTAGGTCAAGACTTCAGTAAAAACACTGGAAATGTAACATTGACCCATTTTCTCTATAACCCAGAACATTACAATGGAAATGGTACTTTTTATAACTCTACGGCTTATGATTAGCGAATTCCAGGATCAAGACTCTTTATTTGAAGGCTACCTACATAGGGACTGCATAAATATCTATAAATGAATACTTCTTTTCTCTATACTCTACTCAGTGAGTGGGGAATTTACCTAATGTGTAACCTTAGATTTATCATCTTTCTGTAATTACTGGAATAAATCGACaaccatttttctttattattgttgttgaaTGCATGTGCTATGTGGCCCCTATGTTAGTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649739.1 lncRNA upstream 135099 63297863 ~ 63298732 (+) True LOC111191941
TU40658 lncRNA upstream 145697 63263950 ~ 63288134 (+) True G30335
TU40634 lncRNA upstream 283616 63149666 ~ 63150215 (+) True G30314
TU40631 lncRNA upstream 291163 63139298 ~ 63142668 (+) True G30311
TU40572 lncRNA upstream 316416 63116862 ~ 63117415 (+) True G30280
XR_002649180.1 lncRNA downstream 30261 63466243 ~ 63468751 (+) True LOC103041812
TU40768 lncRNA downstream 30293 63466275 ~ 63468617 (+) False LOC103041812
TU40773 lncRNA downstream 91539 63527521 ~ 63550200 (+) True G30393
TU40942 lncRNA downstream 821132 64257114 ~ 64269674 (+) False kit
TU40949 lncRNA downstream 870133 64306115 ~ 64306424 (+) True G30517
XM_022664370.1 mRNA upstream 54309 63365674 ~ 63379522 (+) False spata18
XM_022664364.1 mRNA upstream 54309 63365676 ~ 63379522 (+) True spata18
XM_022664352.1 mRNA upstream 98963 63318652 ~ 63334868 (+) False dcun1d4
XM_007257029.2 mRNA upstream 98963 63319256 ~ 63334868 (+) False dcun1d4
XM_007257030.3 mRNA upstream 98963 63321555 ~ 63334868 (+) True dcun1d4
XM_007257035.2 mRNA downstream 85563 63521545 ~ 63524944 (+) True rasl11b
XM_022664403.1 mRNA downstream 328787 63764769 ~ 63822100 (+) False fip1l1
XM_022664404.1 mRNA downstream 328787 63764769 ~ 63822100 (+) False fip1l1
XM_022664402.1 mRNA downstream 328788 63764770 ~ 63822100 (+) False fip1l1
XM_022664401.1 mRNA downstream 328789 63764771 ~ 63822100 (+) True fip1l1
TU40713 other upstream 88138 63335734 ~ 63345693 (+) True G30362
TU40718 other upstream 88138 63335734 ~ 63345693 (+) False G30362
TU40730 other upstream 88138 63335734 ~ 63345693 (+) False G30362
TU40731 other upstream 88138 63335734 ~ 63345693 (+) False G30362
TU40712 other upstream 88138 63335927 ~ 63345693 (+) False G30362
trnad-guc_4 other downstream 1637619 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 1638589 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 1639134 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 1662520 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 1663309 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile