RNA id: TU41041


Basic Information

Item Value
RNA id TU41041
length 1307
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G30588
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64542115 ~ 64543421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAAGATAACATGTATAAAAACAGCGTGCAAAGTCTCTGTTCAGTAaagtgactcacacacacacagaggtgcATTCGAACTCTTGTTTCTTTTACTGGGTAACTCACATGAACTAACACATTGCTAATGCCACCTACAGGATGACTGATGTAACAACAGCTATAAGTTTAACAACTACATAACATTTCCTCCCACCTTACTGAAAAAGTACACATAAATGTTTCTTGATTAATTTACAGAACTAAACTAGAGGTCGGGAGTAGACTGTCCCTGGCCTCAAGCCAAATCAGGGGATTATTCTGCCCCTTTGCAGAAATGGCCCACTAGGATAACTACATACAGTCCATAGTTCTTTTCCTTTCAGTTTCTGTTCAGTTGTTCTATATGCAACACAAGTTAAAGTAAAAGTTCTACAGATTCAGGCGGTCAGGTGGTTTAGTAACTCGAACAGGGTAGCGCCTGGTTCTCTCTTTTGAAGAAATGGCATCCTGTGTATTCTGACCATTAGGTGGCATATCTCTGGACGTATGGTGGCTGTTTTCAGCTGCTGTAGACAAACTTGTCTCAGCAGACATGTGGACAGTTGAAGGTCCAGCGGACAGACTTGAAGATACAACTGTGTCTGATTCTGCAGATTGTCCTGGAGCAATCTGTCTCTGGTGAGGCAGAAGTTGATCAGCATGACGTCGCCAGGATTCTGTTGCACCTACATCCACTGTGTACGAAACTGGTCCACTTTGGGTTGTAACGACTCCTTTTGCCCATTTCTCTCCCCCTCTGTAATCCCAAGCCAACACAACATCACCAACTGCAAAATGTCTCAGTTTGGAACGAGAGGCTCTACGGAGGATCTGTGACTCCTGTGTGCGTCTCACAGCAGACTGAACACTTGGTTTCACAGCGTCCAGACGAGTGCGCAGTCGTCTGCCCAGAAAAAGCATGGCTGGAGACTCTTTAGTCGTTGAGTGTGGTGTGTTACGGTAGGTCAGGAGAAAGGCATCCAACCTCTGTTGGAGAGGGGTTGAGGAGTGCTTTGAGGACTTGCCCGTTAGTGGCTGGATGGTACGGAGCTGAGCGAATGTGCTTGACATGGTTAGCTTTTAGGAATGTGGCAAATTCCTGTGCCGTGAACTGAGGTCCATTATCGCTGACAAGGACTTCAGGAATTCCATAGCGGCTGAAAAGATTCCGCAAAACACGAATAGTCCTGTCTGTGGTTGTGGACTCCATAATCTGCACTTCTGGCCACTTCGAATGAGCATCAACCACAACCATGTACATGTGACCCTCAGTTGGTCCTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41040 lncRNA upstream 11952 64529930 ~ 64530163 (+) True G30587
TU40985 lncRNA upstream 85683 64454774 ~ 64456432 (+) True G30543
TU40982 lncRNA upstream 116713 64423509 ~ 64425402 (+) True G30540
TU40981 lncRNA upstream 119220 64422501 ~ 64422895 (+) True G30539
TU40949 lncRNA upstream 235691 64306115 ~ 64306424 (+) True G30517
TU41042 lncRNA downstream 882 64544303 ~ 64546122 (+) True G30589
TU41081 lncRNA downstream 69539 64612960 ~ 64614108 (+) True G30615
TU41083 lncRNA downstream 72006 64615427 ~ 64622338 (+) True G30617
TU41109 lncRNA downstream 165902 64709323 ~ 64719038 (+) True G30640
TU41139 lncRNA downstream 177534 64720955 ~ 64832837 (+) True G30646
XM_022664462.1 mRNA upstream 123672 64412269 ~ 64418443 (+) True LOC103022915
XM_022664465.1 mRNA upstream 123672 64412269 ~ 64418443 (+) False LOC103022915
XM_022664467.1 mRNA upstream 123672 64412272 ~ 64418443 (+) False LOC103022915
XM_007257047.3 mRNA upstream 130414 64399672 ~ 64411701 (+) True tmem165
XM_007257048.3 mRNA upstream 144486 64394209 ~ 64397629 (+) True srd5a3
XM_022664505.1 mRNA downstream 28949 64572370 ~ 64589618 (+) True exoc1
XM_022664516.1 mRNA downstream 28949 64572370 ~ 64589618 (+) False exoc1
XM_022664510.1 mRNA downstream 28949 64572370 ~ 64589618 (+) False exoc1
XM_007259518.3 mRNA downstream 28950 64572371 ~ 64589618 (+) False exoc1
XM_007259519.3 mRNA downstream 28951 64572372 ~ 64589618 (+) False exoc1
TU40713 other upstream 1196422 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 530180 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 531150 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 531695 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 555081 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 555870 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile