RNA id: TU41042


Basic Information

Item Value
RNA id TU41042
length 1390
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G30589
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64544303 ~ 64546122 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATCATAATGTGTCAATACATTGTGTGACACAAGCTGTTCCTTTGCCCACCTAAAAGCAGATTCACATTCCACAGACCAATGCCAACGTGTCTCCTTGCACAATAGGGCATTCAGAGGATTCAGAATGGTTGCAAGATTCGGTATGAAGCGCCCATAATAATTTATCAGACCCAGGAATGATCTCAACTGGGTGAGATTGATGGGAGCCGGTGCTTCGACAATTGCTCGCACTTTCTCTGGAGATTTGTGCAATCCTGCAGAATCAATTATATGACCCAGGTACTCCAAAGAGTCTTTGAAAAATTCACATTTGTCCTTCTCAACTCGCAAGCCAAACTCCTCCAGACGTCCAAGCACTGCATCAAGATGTTGTAGGTGTTCGGCGTCAGTACAGCCAGTCACTAATATGTCATCCAGATAACAGTGTACGTTGGGTAGCCCTTGCAATATGGGACCACTCTCGGCTGGAAAAACTTGGGTTTGTGCTCAGGCTTTAGTGACACGTTTGCTTCAATGCCTTTCATCACTCCTATCTCTTTAGAGAACACTGCAGCATGTTTCCGCAACACATCATCCAGCGTACCCATTCGAACTGCCCGTATCTCTTTCCAGTTCAATTTGATTTGACGCAACCACTCTCTGCCAAACAACGGTGGATATTCGCCCTGGACAACATACAGAGGAAGCACagcagtttgtttgttcattttcacTTGAACATTGACGACCCCTAGTGGACACAATGTTGGCTGTAGGGGTAAATGGTTCAGTTTCGCTTCATACGTGGCTACTGACATCAGTGAGACTGCTGCCCCTGTGTCTAGCTCCATCTCACAAGAGATTCCCTCAATTTCAGGTTTTACTATGATGCGTGCATTTTCTCCTGCTTTAGAAAGTTTGTGCAGGGCTAGGTCAGAGTCTGTATCATCACTGGAAACCCTTCCTGCATCCACACGATGCACACGTTTTCTTTCGGCAGAACCCTTGTCTCTGGTTGGTCTGTTCTtcattttactttgttttattgTCGTCTTATTAGATCTGCAAACACGACTTATGTGTCCCTTTTTTCCACACGAATTGCAATTCTTATCCTTGTACCAACAATCATCTTCATTATGATTTGTTTTCCCAcatcttttgcatttattttggaCTTTGcttgatgagagagagagggcatgcACCTTTAGTGAACCACTGAGCTGCTGTGACTCTCGAGCTGCTGTCTCCATGGATGCTGCTATTTCGACCGCTTTTTGAAATGTGAGCGAAGCCTCTGTGAGCAGTCGTTTTTGCATAGCTTCACTCTGCAATCCACAAACAAATCTGTCTCGGAGCGCATCTTCCAACTGTTCCCCAAACTCACAATGCTCAGAAAGTTTTTTA

Function

GO:

id name namespace
GO:0005158 insulin receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41041 lncRNA upstream 882 64542115 ~ 64543421 (+) True G30588
TU41040 lncRNA upstream 14140 64529930 ~ 64530163 (+) True G30587
TU40985 lncRNA upstream 87871 64454774 ~ 64456432 (+) True G30543
TU40982 lncRNA upstream 118901 64423509 ~ 64425402 (+) True G30540
TU40981 lncRNA upstream 121408 64422501 ~ 64422895 (+) True G30539
TU41081 lncRNA downstream 66838 64612960 ~ 64614108 (+) True G30615
TU41083 lncRNA downstream 69305 64615427 ~ 64622338 (+) True G30617
TU41109 lncRNA downstream 163201 64709323 ~ 64719038 (+) True G30640
TU41139 lncRNA downstream 174833 64720955 ~ 64832837 (+) True G30646
TU41133 lncRNA downstream 183942 64730064 ~ 64822659 (+) False G30644
XM_022664462.1 mRNA upstream 125860 64412269 ~ 64418443 (+) True LOC103022915
XM_022664465.1 mRNA upstream 125860 64412269 ~ 64418443 (+) False LOC103022915
XM_022664467.1 mRNA upstream 125860 64412272 ~ 64418443 (+) False LOC103022915
XM_007257047.3 mRNA upstream 132602 64399672 ~ 64411701 (+) True tmem165
XM_007257048.3 mRNA upstream 146674 64394209 ~ 64397629 (+) True srd5a3
XM_022664505.1 mRNA downstream 26248 64572370 ~ 64589618 (+) True exoc1
XM_022664516.1 mRNA downstream 26248 64572370 ~ 64589618 (+) False exoc1
XM_022664510.1 mRNA downstream 26248 64572370 ~ 64589618 (+) False exoc1
XM_007259518.3 mRNA downstream 26249 64572371 ~ 64589618 (+) False exoc1
XM_007259519.3 mRNA downstream 26250 64572372 ~ 64589618 (+) False exoc1
TU40713 other upstream 1198610 63335734 ~ 63345693 (+) True G30362
trnad-guc_4 other downstream 527479 65073601 ~ 65073672 (+) True trnad-guc_4
trnad-guc_5 other downstream 528449 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_6 other downstream 528994 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_9 other downstream 552380 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 553169 65099291 ~ 65099362 (+) True trnad-guc_10

Expression Profile