RNA id: TU41249


Basic Information

Item Value
RNA id TU41249
length 440
lncRNA type sense_over
GC content 0.39
exon number 3
gene id LOC103031672
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65077780 ~ 65086780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTACCCCAAAATGTACAGTGATGACCCGGCGGCCCTATATCACCTGTATCAGAGAGGCTCAACCAAAACACTAATGAAATCCTACCTCTGTTCCTGTTCTTTTTGACTGCTGGAGGCATACACCAATCCAGTGAGTTCAGTCAGACACAAATATTATTAGATCATCATTAGTGGACAGCCATCTTTATGGTttatatgtgcatgtgtgtctcTTAGCGTCTGGCTAGTGGCTTGGGGGCAATTTGGATTGTCAGCAGATTGGTGTACGCACACGGATACTCATCTGGAGATCCTGCTAAGAGGAAGCGAGGGGCTTTTGGGGACTTGGCTTTGCTGGGCCTGGTCTTCTGTACTGTGGACAGTGGCAGAACCATGCTGGGGTGGGGCTGTAGGCCCAAGTGGTCCAGAGGGatttttaaaactctttaaatgaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41246 lncRNA upstream 3038 65076472 ~ 65080951 (+) True G30726
TU41242 lncRNA upstream 24539 65057519 ~ 65059450 (+) True G30722
TU41241 lncRNA upstream 26001 65057519 ~ 65057988 (+) False G30722
TU41204 lncRNA upstream 38311 65032607 ~ 65045678 (+) False LOC103033886
TU41224 lncRNA upstream 96683 64984478 ~ 64987306 (+) True G30710
TU41296 lncRNA downstream 284275 65370408 ~ 65371798 (+) True G30763
TU41300 lncRNA downstream 317389 65403522 ~ 65441108 (+) True G30767
TU41304 lncRNA downstream 344101 65430234 ~ 65432399 (+) True G30771
TU41306 lncRNA downstream 345326 65431459 ~ 65433073 (+) False G30772
TU41307 lncRNA downstream 345326 65431459 ~ 65433073 (+) True G30772
XM_007259496.3 mRNA upstream 16591 65061824 ~ 65067398 (+) True mmachc
XM_007259499.3 mRNA upstream 37011 65022419 ~ 65046978 (+) True LOC103033886
XM_007259501.3 mRNA upstream 149521 64926535 ~ 64934468 (+) True LOC103034427
XM_007259503.2 mRNA upstream 193336 64880938 ~ 64890653 (+) True LOC103035066
XM_022664648.1 mRNA upstream 207274 64869851 ~ 64876715 (+) True LOC103035382
XM_007259524.2 mRNA downstream 21377 65107510 ~ 65146627 (+) True LOC103041220
XM_007259490.3 mRNA downstream 97224 65183357 ~ 65211505 (+) True LOC103031359
XM_007259489.3 mRNA downstream 126560 65212693 ~ 65224500 (+) True echdc2
XM_007259483.3 mRNA downstream 160398 65246531 ~ 65249310 (+) True LOC103029237
XM_007259487.3 mRNA downstream 161202 65247335 ~ 65447846 (+) False ralgps2
trnad-guc_6 other upstream 8802 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_5 other upstream 9347 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_4 other upstream 10317 65073601 ~ 65073672 (+) True trnad-guc_4
TU40731 other upstream 1738296 63335734 ~ 63345693 (+) False G30362
trnad-guc_9 other downstream 12369 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_10 other downstream 13158 65099291 ~ 65099362 (+) True trnad-guc_10
TU41629 other downstream 742648 65828781 ~ 65837365 (+) True G31000
XR_002649741.1 other downstream 762994 65849127 ~ 65849762 (+) True LOC111191945
TU42094 other downstream 2128172 67214305 ~ 67215186 (+) True G31355

Expression Profile