RNA id: TU41304


Basic Information

Item Value
RNA id TU41304
length 302
lncRNA type intronic
GC content 0.29
exon number 2
gene id G30771
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65430234 ~ 65432399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgactttaaaatatttatttttaaaaattaaagttgtgtttacttaacttagcttagctttatatttaaaaggaaattagaaggaaaatatggtgacacacctgttccttactagtgtcgcatgatgcaccttataatctggtgcgccttatgtatatgaaaatagaccataaaCGAGATGTTTATTGATCGTGCACCTTATAGTATGAGAAATACGTTATACACAGCCTGTTAAAAGCTTGGAGGCgcccaaaagttttttttttttttccttcataaatgagatttaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41296 lncRNA upstream 58436 65370408 ~ 65371798 (+) True G30763
TU41249 lncRNA upstream 344101 65083989 ~ 65086133 (+) False LOC103031672
TU41246 lncRNA upstream 349283 65076472 ~ 65080951 (+) True G30726
TU41242 lncRNA upstream 370784 65057519 ~ 65059450 (+) True G30722
TU41241 lncRNA upstream 372246 65057519 ~ 65057988 (+) False G30722
TU41312 lncRNA downstream 13955 65446354 ~ 65446930 (+) True G30774
TU41311 lncRNA downstream 14265 65446664 ~ 65446930 (+) False G30774
TU41313 lncRNA downstream 35074 65467473 ~ 65468744 (+) True G30775
TU41319 lncRNA downstream 63122 65495521 ~ 65496339 (+) True G30779
TU41320 lncRNA downstream 64695 65497094 ~ 65500395 (+) True G30780
XM_007259483.3 mRNA upstream 180924 65246531 ~ 65249310 (+) True LOC103029237
XM_007259489.3 mRNA upstream 205734 65212693 ~ 65224500 (+) True echdc2
XM_007259490.3 mRNA upstream 218729 65183357 ~ 65211505 (+) True LOC103031359
XM_007259524.2 mRNA upstream 283607 65107510 ~ 65146627 (+) True LOC103041220
XM_022678446.1 mRNA upstream 343454 65077780 ~ 65086780 (+) True LOC103031672
XM_007259480.3 mRNA downstream 24338 65456737 ~ 65490821 (+) False fam20b
XM_022664809.1 mRNA downstream 26059 65458458 ~ 65490821 (+) True fam20b
XM_007259475.2 mRNA downstream 422535 65854934 ~ 65862128 (+) True plpp6
XM_022664860.1 mRNA downstream 436949 65869348 ~ 65886738 (+) True LOC103025553
XM_022664867.1 mRNA downstream 458531 65890930 ~ 65902416 (+) True LOC103024186
trnad-guc_10 other upstream 330872 65099291 ~ 65099362 (+) True trnad-guc_10
trnad-guc_9 other upstream 331661 65098502 ~ 65098573 (+) True trnad-guc_9
trnad-guc_6 other upstream 355047 65075116 ~ 65075187 (+) True trnad-guc_6
trnad-guc_5 other upstream 355592 65074571 ~ 65074642 (+) True trnad-guc_5
trnad-guc_4 other upstream 356562 65073601 ~ 65073672 (+) True trnad-guc_4
TU41629 other downstream 396382 65828781 ~ 65837365 (+) True G31000
XR_002649741.1 other downstream 416728 65849127 ~ 65849762 (+) True LOC111191945
TU42094 other downstream 1781906 67214305 ~ 67215186 (+) True G31355
TU42187 other downstream 2064804 67497203 ~ 67497697 (+) True G31407
TU42315 other downstream 2399421 67831820 ~ 67833215 (+) False hmcn1

Expression Profile